miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30654 5' -66.1 NC_006549.1 + 51000 0.74 0.125752
Target:  5'- -gGGCCCCUUAGGGCCgaucGGCCCUa -3'
miRNA:   3'- gaCCGGGGGGUCCUGGaggaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50889 0.66 0.441606
Target:  5'- -gGGUCCUCUGGGGCCUUg-GGaCCCa -3'
miRNA:   3'- gaCCGGGGGGUCCUGGAGgaCCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 50561 0.67 0.392221
Target:  5'- -gGGCCaaCCu-GACCUUgaGGCCCCg -3'
miRNA:   3'- gaCCGGggGGucCUGGAGgaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50483 0.78 0.067436
Target:  5'- uCUGGCCCCgCGGGGCCaacgaggCCaaugggacccacUGGCCCCg -3'
miRNA:   3'- -GACCGGGGgGUCCUGGa------GG------------ACCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50375 0.67 0.383564
Target:  5'- uCUGGCCCgggaggaCCCucuGGGCCgUCC--GCCCCc -3'
miRNA:   3'- -GACCGGG-------GGGu--CCUGG-AGGacCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50226 0.66 0.43313
Target:  5'- -gGGCCCUuggacgCCAGGAgcgcccauaUCUCCgauUGGUCCCc -3'
miRNA:   3'- gaCCGGGG------GGUCCU---------GGAGG---ACCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 50136 0.69 0.298289
Target:  5'- -cGGUCCCUguGGGCCccuuugUCCUauuuGCCCCa -3'
miRNA:   3'- gaCCGGGGGguCCUGG------AGGAc---CGGGG- -5'
30654 5' -66.1 NC_006549.1 + 49813 0.67 0.384346
Target:  5'- uUGGUCCCgUGGGcCCagCUGGgCCCa -3'
miRNA:   3'- gACCGGGGgGUCCuGGagGACCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 49735 0.69 0.304856
Target:  5'- cCUGcGUCCCCCGcGGGCCcguggggCCcguUGGCCCg -3'
miRNA:   3'- -GAC-CGGGGGGU-CCUGGa------GG---ACCGGGg -5'
30654 5' -66.1 NC_006549.1 + 49620 0.66 0.450175
Target:  5'- -aGGUCCUCUAGGcccggguuuGCC-CCUaGGCCCg -3'
miRNA:   3'- gaCCGGGGGGUCC---------UGGaGGA-CCGGGg -5'
30654 5' -66.1 NC_006549.1 + 41845 0.7 0.249686
Target:  5'- -gGGCCCgCgAGGACCcCCgggGGCgCCg -3'
miRNA:   3'- gaCCGGGgGgUCCUGGaGGa--CCGgGG- -5'
30654 5' -66.1 NC_006549.1 + 41739 0.66 0.424749
Target:  5'- uCUGGCaagacuggaCCCAGGGgCgcCCgcgGGCCCCc -3'
miRNA:   3'- -GACCGgg-------GGGUCCUgGa-GGa--CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41701 0.78 0.072744
Target:  5'- -cGGCCCCCCcGGcCCcCCUGGgCCCg -3'
miRNA:   3'- gaCCGGGGGGuCCuGGaGGACCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 41581 0.77 0.076503
Target:  5'- -cGGUCCCCaAGGACUUCCcGGCCUCa -3'
miRNA:   3'- gaCCGGGGGgUCCUGGAGGaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41332 0.66 0.43313
Target:  5'- -aGGCCUCCgGGGAaacag-GGCCCCu -3'
miRNA:   3'- gaCCGGGGGgUCCUggaggaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41279 0.71 0.203025
Target:  5'- -aGGCCCUCaAGGACUUCCcGGaCCCg -3'
miRNA:   3'- gaCCGGGGGgUCCUGGAGGaCCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 41148 0.71 0.219695
Target:  5'- -gGGUCCCaCGGGACCUaggggcccgagaggaCCUaucGGCCCCg -3'
miRNA:   3'- gaCCGGGGgGUCCUGGA---------------GGA---CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41057 0.81 0.044876
Target:  5'- gCUGGCCCCaCAGGACCaUCC-GGCCCg -3'
miRNA:   3'- -GACCGGGGgGUCCUGG-AGGaCCGGGg -5'
30654 5' -66.1 NC_006549.1 + 41001 0.76 0.098253
Target:  5'- -aGGCCCCCaGGGAUC-CCUgggGGCCCCc -3'
miRNA:   3'- gaCCGGGGGgUCCUGGaGGA---CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 40956 0.72 0.184829
Target:  5'- -aGGCUCCCCuGGG-CUCacgGGCCCCc -3'
miRNA:   3'- gaCCGGGGGGuCCUgGAGga-CCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.