miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30654 5' -66.1 NC_006549.1 + 122653 0.67 0.376576
Target:  5'- -cGGCCUUCgAGGaagcguccgugGCCUUCUGGUCCg -3'
miRNA:   3'- gaCCGGGGGgUCC-----------UGGAGGACCGGGg -5'
30654 5' -66.1 NC_006549.1 + 7453 0.67 0.376576
Target:  5'- aUGGCgaCCCGGGugCuaacggcaccguUCCUGGCuaCCCg -3'
miRNA:   3'- gACCGggGGGUCCugG------------AGGACCG--GGG- -5'
30654 5' -66.1 NC_006549.1 + 102549 0.68 0.342222
Target:  5'- uUGGgCCCgCGGGGCCggcggaaccagguucUCCUGGUucaCCCu -3'
miRNA:   3'- gACCgGGGgGUCCUGG---------------AGGACCG---GGG- -5'
30654 5' -66.1 NC_006549.1 + 123109 0.68 0.332225
Target:  5'- uCUGGUCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 123067 0.68 0.332225
Target:  5'- uCUGGUCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 122857 0.68 0.332225
Target:  5'- uCUGGUCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5'
30654 5' -66.1 NC_006549.1 + 49735 0.69 0.304856
Target:  5'- cCUGcGUCCCCCGcGGGCCcguggggCCcguUGGCCCg -3'
miRNA:   3'- -GAC-CGGGGGGU-CCUGGa------GG---ACCGGGg -5'
30654 5' -66.1 NC_006549.1 + 50136 0.69 0.298289
Target:  5'- -cGGUCCCUguGGGCCccuuugUCCUauuuGCCCCa -3'
miRNA:   3'- gaCCGGGGGguCCUGG------AGGAc---CGGGG- -5'
30654 5' -66.1 NC_006549.1 + 7074 0.69 0.285487
Target:  5'- -gGGUCCCaCC-GGACCcgCCgGGCCCg -3'
miRNA:   3'- gaCCGGGG-GGuCCUGGa-GGaCCGGGg -5'
30654 5' -66.1 NC_006549.1 + 6975 0.7 0.267102
Target:  5'- -cGGUCCUCaAGGGCCUCagGGCCCa -3'
miRNA:   3'- gaCCGGGGGgUCCUGGAGgaCCGGGg -5'
30654 5' -66.1 NC_006549.1 + 40701 0.7 0.26119
Target:  5'- -gGGaaCCCCGGGACCUCgCggacaaaugGGCCCg -3'
miRNA:   3'- gaCCggGGGGUCCUGGAG-Ga--------CCGGGg -5'
30654 5' -66.1 NC_006549.1 + 102390 0.7 0.255385
Target:  5'- uUGGCCCUUguGGACC-CauggGGCCCg -3'
miRNA:   3'- gACCGGGGGguCCUGGaGga--CCGGGg -5'
30654 5' -66.1 NC_006549.1 + 41845 0.7 0.249686
Target:  5'- -gGGCCCgCgAGGACCcCCgggGGCgCCg -3'
miRNA:   3'- gaCCGGGgGgUCCUGGaGGa--CCGgGG- -5'
30654 5' -66.1 NC_006549.1 + 7911 0.7 0.244093
Target:  5'- -gGGCCCCCCuGGAaagguagaauauCUgcaggguauUCCaGGCCCCg -3'
miRNA:   3'- gaCCGGGGGGuCCU------------GG---------AGGaCCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 7002 0.71 0.227936
Target:  5'- -cGGCgCUCCGGGACCUCaagGaGCuCCCg -3'
miRNA:   3'- gaCCGgGGGGUCCUGGAGga-C-CG-GGG- -5'
30654 5' -66.1 NC_006549.1 + 41148 0.71 0.219695
Target:  5'- -gGGUCCCaCGGGACCUaggggcccgagaggaCCUaucGGCCCCg -3'
miRNA:   3'- gaCCGGGGgGUCCUGGA---------------GGA---CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 41279 0.71 0.203025
Target:  5'- -aGGCCCUCaAGGACUUCCcGGaCCCg -3'
miRNA:   3'- gaCCGGGGGgUCCUGGAGGaCCgGGG- -5'
30654 5' -66.1 NC_006549.1 + 102030 0.72 0.200199
Target:  5'- -gGGUCCCgauucuccaucgcguCCGGGugCUCCUcugGGCCCUg -3'
miRNA:   3'- gaCCGGGG---------------GGUCCugGAGGA---CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 40956 0.72 0.184829
Target:  5'- -aGGCUCCCCuGGG-CUCacgGGCCCCc -3'
miRNA:   3'- gaCCGGGGGGuCCUgGAGga-CCGGGG- -5'
30654 5' -66.1 NC_006549.1 + 122773 0.72 0.180511
Target:  5'- uCUGGCCCgCCucuucGGCCUUCUGGCCagCCu -3'
miRNA:   3'- -GACCGGGgGGuc---CUGGAGGACCGG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.