miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30655 5' -54.6 NC_006549.1 + 35944 0.66 0.939515
Target:  5'- --cCCCGGCAuCAAucCGGUGAcGGGAa- -3'
miRNA:   3'- caaGGGCCGU-GUUu-GCCGCU-UCCUga -5'
30655 5' -54.6 NC_006549.1 + 97112 0.66 0.939515
Target:  5'- --gCCgGGCuACGAaauagaaaACGGaCGGAGGACa -3'
miRNA:   3'- caaGGgCCG-UGUU--------UGCC-GCUUCCUGa -5'
30655 5' -54.6 NC_006549.1 + 26679 0.67 0.906263
Target:  5'- -gUUCCGGUugcuAUAGAC-GCGGAGGGCg -3'
miRNA:   3'- caAGGGCCG----UGUUUGcCGCUUCCUGa -5'
30655 5' -54.6 NC_006549.1 + 34655 0.67 0.899863
Target:  5'- aUUCCCGGCuuGgGAAUGGCGcGGaGAUg -3'
miRNA:   3'- cAAGGGCCG--UgUUUGCCGCuUC-CUGa -5'
30655 5' -54.6 NC_006549.1 + 33155 0.67 0.893222
Target:  5'- --cCCgCGGCGCAcacuGCGGUGuGGGugUa -3'
miRNA:   3'- caaGG-GCCGUGUu---UGCCGCuUCCugA- -5'
30655 5' -54.6 NC_006549.1 + 83098 0.67 0.891183
Target:  5'- aUUCCCGGCGCGAucaaGGauagacccgaagcgUGggGGAUa -3'
miRNA:   3'- cAAGGGCCGUGUUug--CC--------------GCuuCCUGa -5'
30655 5' -54.6 NC_006549.1 + 83577 0.67 0.886345
Target:  5'- -gUCaCCGGUAUGGugGG-GggGGGCg -3'
miRNA:   3'- caAG-GGCCGUGUUugCCgCuuCCUGa -5'
30655 5' -54.6 NC_006549.1 + 52752 0.69 0.813789
Target:  5'- cGUUCCCcgucgcaGGaggaACAAGCGGCGGAGcGCg -3'
miRNA:   3'- -CAAGGG-------CCg---UGUUUGCCGCUUCcUGa -5'
30655 5' -54.6 NC_006549.1 + 47389 0.71 0.719216
Target:  5'- ---gUUGGCGCAAGCGGaCGGAGGAa- -3'
miRNA:   3'- caagGGCCGUGUUUGCC-GCUUCCUga -5'
30655 5' -54.6 NC_006549.1 + 41568 0.71 0.67833
Target:  5'- cUUCCCGGCcucacuggcaGCAGAgGGaaaaGggGGACa -3'
miRNA:   3'- cAAGGGCCG----------UGUUUgCCg---CuuCCUGa -5'
30655 5' -54.6 NC_006549.1 + 58957 0.73 0.584886
Target:  5'- -aUCUCgGGCGCu-ACGGUGGAGGGCg -3'
miRNA:   3'- caAGGG-CCGUGuuUGCCGCUUCCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.