miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30658 3' -57 NC_006549.1 + 74444 0.66 0.875359
Target:  5'- uGGCUCacgggcaacagagagGCGGCcguaagagcaGUGGUUaaGGACGCCCu -3'
miRNA:   3'- -CCGGG---------------UGCCG----------UACUAGagCCUGUGGG- -5'
30658 3' -57 NC_006549.1 + 49857 0.66 0.87249
Target:  5'- gGGCCCAgGGgGg---CcCGGAgGCCCu -3'
miRNA:   3'- -CCGGGUgCCgUacuaGaGCCUgUGGG- -5'
30658 3' -57 NC_006549.1 + 75900 0.67 0.849927
Target:  5'- cGCCUuuGGCGgauUCUCuGACACCUg -3'
miRNA:   3'- cCGGGugCCGUacuAGAGcCUGUGGG- -5'
30658 3' -57 NC_006549.1 + 7413 0.67 0.845201
Target:  5'- gGGCCCGCccGGCcc---CUCGGACcucaagggccccaggGCCCg -3'
miRNA:   3'- -CCGGGUG--CCGuacuaGAGCCUG---------------UGGG- -5'
30658 3' -57 NC_006549.1 + 41808 0.67 0.842012
Target:  5'- gGGCCCGCGGguccAUC-CGGAaaACCCa -3'
miRNA:   3'- -CCGGGUGCCguacUAGaGCCUg-UGGG- -5'
30658 3' -57 NC_006549.1 + 7218 0.67 0.833912
Target:  5'- aGGCCC-CGGUAUccccgggccGUC-CGGAC-CCCg -3'
miRNA:   3'- -CCGGGuGCCGUAc--------UAGaGCCUGuGGG- -5'
30658 3' -57 NC_006549.1 + 60511 0.67 0.83227
Target:  5'- uGGCCCACcccauGGCGcccacucccaagGAUCUCucgcccgaGGCGCCCg -3'
miRNA:   3'- -CCGGGUG-----CCGUa-----------CUAGAGc-------CUGUGGG- -5'
30658 3' -57 NC_006549.1 + 54779 0.67 0.813755
Target:  5'- gGGCaaaauuggaaaaACGGCGUGcUCUCGGGCAUg- -3'
miRNA:   3'- -CCGgg----------UGCCGUACuAGAGCCUGUGgg -5'
30658 3' -57 NC_006549.1 + 8881 0.68 0.781819
Target:  5'- gGGCCgUACGGUAUGAcgucUUUUGGuuucgaGCCCg -3'
miRNA:   3'- -CCGG-GUGCCGUACU----AGAGCCug----UGGG- -5'
30658 3' -57 NC_006549.1 + 68265 0.68 0.781819
Target:  5'- --gCCGCGuGUcgGGUCcggUGGACGCCCu -3'
miRNA:   3'- ccgGGUGC-CGuaCUAGa--GCCUGUGGG- -5'
30658 3' -57 NC_006549.1 + 21249 0.69 0.705376
Target:  5'- aGGCUCggGCGGCAUGggCa-GGGCGgCCg -3'
miRNA:   3'- -CCGGG--UGCCGUACuaGagCCUGUgGG- -5'
30658 3' -57 NC_006549.1 + 49793 0.7 0.695456
Target:  5'- gGGCCCACGGgAccccuuuGUC-CGGguGCGCCCa -3'
miRNA:   3'- -CCGGGUGCCgUac-----UAGaGCC--UGUGGG- -5'
30658 3' -57 NC_006549.1 + 132740 0.7 0.685485
Target:  5'- -uCCCGCGGUuccGUCUaCGGGCACCa -3'
miRNA:   3'- ccGGGUGCCGuacUAGA-GCCUGUGGg -5'
30658 3' -57 NC_006549.1 + 106035 0.7 0.665422
Target:  5'- uGCaCCACGGaagGAUCcCGG-CGCCCa -3'
miRNA:   3'- cCG-GGUGCCguaCUAGaGCCuGUGGG- -5'
30658 3' -57 NC_006549.1 + 120663 0.71 0.604856
Target:  5'- cGGCCaugaugcuaGCGGCAUGcuUCgCGGGC-CCCg -3'
miRNA:   3'- -CCGGg--------UGCCGUACu-AGaGCCUGuGGG- -5'
30658 3' -57 NC_006549.1 + 78630 0.73 0.48714
Target:  5'- uGGCCC-CGGCGacgGGUCUCagagagguGGCGCCCc -3'
miRNA:   3'- -CCGGGuGCCGUa--CUAGAGc-------CUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.