miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30660 3' -48.3 NC_006549.1 + 2753 0.66 0.999019
Target:  5'- -cGCAacGGCUCgccgcguuucGUCAUGAcGCCAgcguACUGUu -3'
miRNA:   3'- gaUGU--UCGAG----------UAGUACU-CGGU----UGACG- -5'
30660 3' -48.3 NC_006549.1 + 101443 0.66 0.998956
Target:  5'- uUACGGGUUCaAUCAUGgacaagauuucaccGGCUAGCUccGCa -3'
miRNA:   3'- gAUGUUCGAG-UAGUAC--------------UCGGUUGA--CG- -5'
30660 3' -48.3 NC_006549.1 + 92072 0.66 0.998797
Target:  5'- gCUAUAAGCgUCAcCA-GAGCCAuggGCg -3'
miRNA:   3'- -GAUGUUCG-AGUaGUaCUCGGUugaCG- -5'
30660 3' -48.3 NC_006549.1 + 119760 0.66 0.998797
Target:  5'- gUGCGAGUUUuUCG-GAGCCAcCUGg -3'
miRNA:   3'- gAUGUUCGAGuAGUaCUCGGUuGACg -5'
30660 3' -48.3 NC_006549.1 + 91466 0.67 0.997436
Target:  5'- aCUugAucAGCUCGUCGUGcGCgCAA-UGCg -3'
miRNA:   3'- -GAugU--UCGAGUAGUACuCG-GUUgACG- -5'
30660 3' -48.3 NC_006549.1 + 70553 0.67 0.99498
Target:  5'- -aGCGGcGCUCAUCAUcGAacaguacuCCAACUGCc -3'
miRNA:   3'- gaUGUU-CGAGUAGUA-CUc-------GGUUGACG- -5'
30660 3' -48.3 NC_006549.1 + 21253 0.68 0.992098
Target:  5'- aUAUAGGCUCGggcggCAUGGGCagGGCgGCc -3'
miRNA:   3'- gAUGUUCGAGUa----GUACUCGg-UUGaCG- -5'
30660 3' -48.3 NC_006549.1 + 114748 0.68 0.990095
Target:  5'- gCUGCAcguguccgggcaguuGGCUCAUgAUGAGCUuguAgaGCa -3'
miRNA:   3'- -GAUGU---------------UCGAGUAgUACUCGGu--UgaCG- -5'
30660 3' -48.3 NC_006549.1 + 111431 0.7 0.972427
Target:  5'- uCUACAAGCU-GUCccUGAGCC--CUGCg -3'
miRNA:   3'- -GAUGUUCGAgUAGu-ACUCGGuuGACG- -5'
30660 3' -48.3 NC_006549.1 + 111483 0.7 0.972427
Target:  5'- uCUACAAGCU-GUCccUGAGCC--CUGCg -3'
miRNA:   3'- -GAUGUUCGAgUAGu-ACUCGGuuGACG- -5'
30660 3' -48.3 NC_006549.1 + 111535 0.7 0.972427
Target:  5'- uCUACAAGCU-GUCccUGAGCC--CUGCg -3'
miRNA:   3'- -GAUGUUCGAgUAGu-ACUCGGuuGACG- -5'
30660 3' -48.3 NC_006549.1 + 15183 0.72 0.945242
Target:  5'- aUGCGAGCUCAUCGUuucccaaGAGCCuagucaUGUc -3'
miRNA:   3'- gAUGUUCGAGUAGUA-------CUCGGuug---ACG- -5'
30660 3' -48.3 NC_006549.1 + 31436 0.75 0.844569
Target:  5'- -cGCGAGCgCAUCAUG-GCCAAUuuUGCc -3'
miRNA:   3'- gaUGUUCGaGUAGUACuCGGUUG--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.