miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30662 3' -51 NC_006549.1 + 72367 0.66 0.987992
Target:  5'- -cGGGCGCGaacccccUCACUGGccccAAcGAUGACa -3'
miRNA:   3'- aaCCCGUGC-------AGUGGCC----UUuUUACUGc -5'
30662 3' -51 NC_006549.1 + 45317 0.67 0.975605
Target:  5'- --cGGCuauuacuGCGUCACCGGAAAcg-GugGa -3'
miRNA:   3'- aacCCG-------UGCAGUGGCCUUUuuaCugC- -5'
30662 3' -51 NC_006549.1 + 116463 0.68 0.963659
Target:  5'- -gGGGCGCuugcccaugGUCGCCGGAGAuucUGcCGu -3'
miRNA:   3'- aaCCCGUG---------CAGUGGCCUUUuu-ACuGC- -5'
30662 3' -51 NC_006549.1 + 11099 0.68 0.960033
Target:  5'- -aGGGCGCGUCuuccugGCgCGGAAAcGAUGAa- -3'
miRNA:   3'- aaCCCGUGCAG------UG-GCCUUU-UUACUgc -5'
30662 3' -51 NC_006549.1 + 46520 0.69 0.947682
Target:  5'- gUGGGC-CGUCAU-GGAAGAGccaaauucUGACGa -3'
miRNA:   3'- aACCCGuGCAGUGgCCUUUUU--------ACUGC- -5'
30662 3' -51 NC_006549.1 + 75354 0.69 0.944939
Target:  5'- -cGGGauggccgguuccuaACGUCGCCGuGAGAAaacAUGGCGg -3'
miRNA:   3'- aaCCCg-------------UGCAGUGGC-CUUUU---UACUGC- -5'
30662 3' -51 NC_006549.1 + 83513 0.69 0.933039
Target:  5'- -cGGGCuuCG-CGCCGGAAccGGAccUGACGg -3'
miRNA:   3'- aaCCCGu-GCaGUGGCCUU--UUU--ACUGC- -5'
30662 3' -51 NC_006549.1 + 98106 0.72 0.850565
Target:  5'- -cGGuGcCACGUCACCGGAcgcguaaaggagcGcgGUGACGa -3'
miRNA:   3'- aaCC-C-GUGCAGUGGCCU-------------UuuUACUGC- -5'
30662 3' -51 NC_006549.1 + 68837 0.75 0.687198
Target:  5'- -cGGGCAcCGUCAUCauaGGAAAGGUGGCc -3'
miRNA:   3'- aaCCCGU-GCAGUGG---CCUUUUUACUGc -5'
30662 3' -51 NC_006549.1 + 134165 0.77 0.580474
Target:  5'- uUUGGGCAUGUUcgCGGAGGAGUGugGc -3'
miRNA:   3'- -AACCCGUGCAGugGCCUUUUUACugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.