Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30663 | 3' | -50.3 | NC_006549.1 | + | 59037 | 0.67 | 0.980749 |
Target: 5'- gGGGCGaAGAGGGcuccUGGGUGGcGUGGGGc -3' miRNA: 3'- -UUUGC-UCUCCCc---ACCUAUCuUACUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 59091 | 0.67 | 0.980749 |
Target: 5'- gGGGCGaAGAGGGcuccUGGGUGGcGUGGGGc -3' miRNA: 3'- -UUUGC-UCUCCCc---ACCUAUCuUACUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 59145 | 0.67 | 0.980749 |
Target: 5'- gGGGCGaAGAGGGcuccUGGGUGGcGUGGGGc -3' miRNA: 3'- -UUUGC-UCUCCCc---ACCUAUCuUACUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 59199 | 0.67 | 0.980749 |
Target: 5'- gGGGCGaAGAGGGcuccUGGGUGGcGUGGGGc -3' miRNA: 3'- -UUUGC-UCUCCCc---ACCUAUCuUACUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 59253 | 0.67 | 0.980749 |
Target: 5'- gGGGCGaAGAGGGcuccUGGGUGGcGUGGGGc -3' miRNA: 3'- -UUUGC-UCUCCCc---ACCUAUCuUACUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 100068 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 100131 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 100194 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 100256 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 100005 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 99942 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 99879 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 99816 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 99753 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 99690 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 99627 | 0.71 | 0.89562 |
Target: 5'- ---gGGGAGGGGUGGA-GGAcucggGAGAg -3' miRNA: 3'- uuugCUCUCCCCACCUaUCUua---CUCU- -5' |
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30663 | 3' | -50.3 | NC_006549.1 | + | 16253 | 0.76 | 0.672407 |
Target: 5'- gAGGCGucGGAGGGGUGGggGGAGUagGAGGc -3' miRNA: 3'- -UUUGC--UCUCCCCACCuaUCUUA--CUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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