miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30665 5' -49.1 NC_006549.1 + 72074 0.66 0.998383
Target:  5'- uGAUaAGCAACGUCaUCgCGuCAAACuGCg -3'
miRNA:   3'- uCUA-UCGUUGCAGaAG-GC-GUUUG-CGg -5'
30665 5' -49.1 NC_006549.1 + 57297 0.66 0.997668
Target:  5'- uGAggAGCAACGUCUgcacauguUCCggcauguugcucGCGAuuuCGCCa -3'
miRNA:   3'- uCUa-UCGUUGCAGA--------AGG------------CGUUu--GCGG- -5'
30665 5' -49.1 NC_006549.1 + 7965 0.67 0.996707
Target:  5'- cGGAgGGCccgGUC-UCCGCgGAGCGCCc -3'
miRNA:   3'- -UCUaUCGuugCAGaAGGCG-UUUGCGG- -5'
30665 5' -49.1 NC_006549.1 + 55258 0.67 0.995923
Target:  5'- -uGUAGCGGCcgccaccaguucugGUUUggaCGCGAGCGCCu -3'
miRNA:   3'- ucUAUCGUUG--------------CAGAag-GCGUUUGCGG- -5'
30665 5' -49.1 NC_006549.1 + 21403 0.67 0.993804
Target:  5'- --cUAGCAACGaugUCCGCAauuuccauaGugGCCc -3'
miRNA:   3'- ucuAUCGUUGCagaAGGCGU---------UugCGG- -5'
30665 5' -49.1 NC_006549.1 + 6379 0.68 0.993229
Target:  5'- cGGAcGGCAgcuuggaaaacuugaGCGUUUUCUuaCGAACGCCa -3'
miRNA:   3'- -UCUaUCGU---------------UGCAGAAGGc-GUUUGCGG- -5'
30665 5' -49.1 NC_006549.1 + 91061 0.68 0.992824
Target:  5'- gGGGUcuGGCGuaggaggaggAUGUCUUUCGCcAAACGCa -3'
miRNA:   3'- -UCUA--UCGU----------UGCAGAAGGCG-UUUGCGg -5'
30665 5' -49.1 NC_006549.1 + 78005 0.68 0.992824
Target:  5'- gGGAUGGCAGacaggggcaGUCccgugCCGCu--CGCCa -3'
miRNA:   3'- -UCUAUCGUUg--------CAGaa---GGCGuuuGCGG- -5'
30665 5' -49.1 NC_006549.1 + 128743 0.68 0.991724
Target:  5'- --uUAGCuuauGCG-CUUCUaCAGACGCCa -3'
miRNA:   3'- ucuAUCGu---UGCaGAAGGcGUUUGCGG- -5'
30665 5' -49.1 NC_006549.1 + 5615 0.68 0.989126
Target:  5'- cGGggAGCGGCGUUUugggaUUgGCGuACGCCg -3'
miRNA:   3'- -UCuaUCGUUGCAGA-----AGgCGUuUGCGG- -5'
30665 5' -49.1 NC_006549.1 + 21517 0.68 0.987609
Target:  5'- ----uGCAGgaGUCUUUCGuCGGGCGCCg -3'
miRNA:   3'- ucuauCGUUg-CAGAAGGC-GUUUGCGG- -5'
30665 5' -49.1 NC_006549.1 + 122087 0.69 0.986624
Target:  5'- ---gAGCGGCcaCUUCCGCAGAuuuggcagcuucggcCGCCg -3'
miRNA:   3'- ucuaUCGUUGcaGAAGGCGUUU---------------GCGG- -5'
30665 5' -49.1 NC_006549.1 + 28994 0.7 0.972023
Target:  5'- ---cGGCAGCGuuuuucaugUCUUCCGCGGuuACaGCCg -3'
miRNA:   3'- ucuaUCGUUGC---------AGAAGGCGUU--UG-CGG- -5'
30665 5' -49.1 NC_006549.1 + 66578 0.71 0.958446
Target:  5'- -cGUAGUGGCGUCcuUUCCGCcguauAACGCUc -3'
miRNA:   3'- ucUAUCGUUGCAG--AAGGCGu----UUGCGG- -5'
30665 5' -49.1 NC_006549.1 + 2759 0.73 0.906772
Target:  5'- cAGGUGcGCAACGgCUcgCCGCGuuucgucauGACGCCa -3'
miRNA:   3'- -UCUAU-CGUUGCaGAa-GGCGU---------UUGCGG- -5'
30665 5' -49.1 NC_006549.1 + 15702 0.74 0.855231
Target:  5'- ---cAGUAACGU--UCCGCAAGCGCg -3'
miRNA:   3'- ucuaUCGUUGCAgaAGGCGUUUGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.