Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 22163 | 0.66 | 0.980604 |
Target: 5'- gGAGCCGA--GGGCCUUgaccucccUGCcucucGGAGCUc -3' miRNA: 3'- -UUCGGCUucUCCGGAA--------ACGu----UUUCGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 122439 | 0.75 | 0.615005 |
Target: 5'- -uGCCGcAucGGCCUUUGCGGAGGCa -3' miRNA: 3'- uuCGGCuUcuCCGGAAACGUUUUCGg -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 53298 | 0.74 | 0.701527 |
Target: 5'- --cCCGAAGAGGCCgcgGCGGGagaagacccAGCCa -3' miRNA: 3'- uucGGCUUCUCCGGaaaCGUUU---------UCGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 5950 | 0.71 | 0.86441 |
Target: 5'- cGGgCGu-GGGGCCUUUGCAGgcGUCa -3' miRNA: 3'- uUCgGCuuCUCCGGAAACGUUuuCGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 70638 | 0.7 | 0.872297 |
Target: 5'- cGGCgGAAGAGGCCguggcguugUGCGGuuuGGGCg -3' miRNA: 3'- uUCGgCUUCUCCGGaa-------ACGUU---UUCGg -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 77492 | 0.7 | 0.879941 |
Target: 5'- gAAGCCGAGcgcauagcaaacGAGG-CUUUGCGAgucucuaaacAGGCCa -3' miRNA: 3'- -UUCGGCUU------------CUCCgGAAACGUU----------UUCGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 22922 | 0.69 | 0.907979 |
Target: 5'- gAAGCCGAAG-GGCUauuuacgUGCGAGGcuuccGCCg -3' miRNA: 3'- -UUCGGCUUCuCCGGaa-----ACGUUUU-----CGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 78245 | 0.69 | 0.914333 |
Target: 5'- cAGCCGGAuauGGCCUUUcucgcGCGAAAGgCg -3' miRNA: 3'- uUCGGCUUcu-CCGGAAA-----CGUUUUCgG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 122478 | 0.69 | 0.931784 |
Target: 5'- ----aGAGucGGCUUUUGCAAAGGCCu -3' miRNA: 3'- uucggCUUcuCCGGAAACGUUUUCGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 97220 | 0.68 | 0.937062 |
Target: 5'- -cGCCGAcaacAGAcuGGCCgugaugGCGAGAGCa -3' miRNA: 3'- uuCGGCU----UCU--CCGGaaa---CGUUUUCGg -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 65243 | 0.68 | 0.942071 |
Target: 5'- cGGUCaAAGAaccGCCUUUGCAAgcuuGAGCCg -3' miRNA: 3'- uUCGGcUUCUc--CGGAAACGUU----UUCGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 7642 | 0.68 | 0.946815 |
Target: 5'- cGGGUCGcAGAGGCgCcaggggaUUGCAAGGGCUa -3' miRNA: 3'- -UUCGGCuUCUCCG-Ga------AACGUUUUCGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 40920 | 0.68 | 0.95042 |
Target: 5'- gGGGCCG-AGAGGaaaCgaaggauucgGCGGGAGCCu -3' miRNA: 3'- -UUCGGCuUCUCCg--Gaaa-------CGUUUUCGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 77218 | 0.68 | 0.954691 |
Target: 5'- cGGGCCGAggagcGGAGGCgUcuccgcuccaacUGCAGAGGCa -3' miRNA: 3'- -UUCGGCU-----UCUCCGgAa-----------ACGUUUUCGg -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 40875 | 0.67 | 0.972899 |
Target: 5'- uGGuCCGAAGGGGCCacaaggaGaCAAAGGCg -3' miRNA: 3'- uUC-GGCUUCUCCGGaaa----C-GUUUUCGg -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 82811 | 0.66 | 0.980604 |
Target: 5'- -uGCCGGAGcGGGCUUgacgGCGuccGCCu -3' miRNA: 3'- uuCGGCUUC-UCCGGAaa--CGUuuuCGG- -5' |
|||||||
30666 | 5' | -51.1 | NC_006549.1 | + | 53443 | 0.76 | 0.582532 |
Target: 5'- cGGCCGAAGAGa---UUGCGGAAGCCg -3' miRNA: 3'- uUCGGCUUCUCcggaAACGUUUUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home