miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30668 5' -48.6 NC_006549.1 + 5613 0.66 0.995291
Target:  5'- gGGAGCGGCGuuuugggauuGGCGuacGCCGCGAGu-- -3'
miRNA:   3'- -UUUUGCCGU----------CUGCua-CGGCGUUUuuu -5'
30668 5' -48.6 NC_006549.1 + 83489 0.66 0.995291
Target:  5'- -uGACGGCcGugGugcccgugGCCGUAGAAAAc -3'
miRNA:   3'- uuUUGCCGuCugCua------CGGCGUUUUUU- -5'
30668 5' -48.6 NC_006549.1 + 84647 0.67 0.992501
Target:  5'- -cAACGGCAcuUGGUGCuCGUAGAAAGg -3'
miRNA:   3'- uuUUGCCGUcuGCUACG-GCGUUUUUU- -5'
30668 5' -48.6 NC_006549.1 + 97470 0.67 0.992501
Target:  5'- --uACGGagaAGACGcgGCCGCuGAAu- -3'
miRNA:   3'- uuuUGCCg--UCUGCuaCGGCGuUUUuu -5'
30668 5' -48.6 NC_006549.1 + 70643 0.67 0.990004
Target:  5'- gAAAACGGCGGAaGAgGCCGUg----- -3'
miRNA:   3'- -UUUUGCCGUCUgCUaCGGCGuuuuuu -5'
30668 5' -48.6 NC_006549.1 + 7716 0.68 0.988532
Target:  5'- cAGGGgGGCcGAUGG-GCCGCAGGGAAu -3'
miRNA:   3'- -UUUUgCCGuCUGCUaCGGCGUUUUUU- -5'
30668 5' -48.6 NC_006549.1 + 53307 0.68 0.986897
Target:  5'- --cACGGCAGAccCGAagagGCCGCGgcggGAGAAg -3'
miRNA:   3'- uuuUGCCGUCU--GCUa---CGGCGU----UUUUU- -5'
30668 5' -48.6 NC_006549.1 + 9878 0.7 0.950924
Target:  5'- ----aGGgGGACGAcGCUGCAAAAGAa -3'
miRNA:   3'- uuuugCCgUCUGCUaCGGCGUUUUUU- -5'
30668 5' -48.6 NC_006549.1 + 130258 0.7 0.946308
Target:  5'- cGGAACGuCGGACcAUGCCGCAGAc-- -3'
miRNA:   3'- -UUUUGCcGUCUGcUACGGCGUUUuuu -5'
30668 5' -48.6 NC_006549.1 + 40660 0.72 0.912726
Target:  5'- uGGGCGGCAGAgGAggGCC-CAGAGGAg -3'
miRNA:   3'- uUUUGCCGUCUgCUa-CGGcGUUUUUU- -5'
30668 5' -48.6 NC_006549.1 + 97879 0.72 0.91078
Target:  5'- -uGACGGC-GACGAagguaaccuguauuUGCCGCAAGGu- -3'
miRNA:   3'- uuUUGCCGuCUGCU--------------ACGGCGUUUUuu -5'
30668 5' -48.6 NC_006549.1 + 63625 0.74 0.834975
Target:  5'- --cACGGCGGugGAUGCCGa------ -3'
miRNA:   3'- uuuUGCCGUCugCUACGGCguuuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.