miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3067 3' -62.7 NC_001493.1 + 58247 0.66 0.599185
Target:  5'- aUGACCa--G-CACCCCGaCGCUCACa -3'
miRNA:   3'- gACUGGccaCgGUGGGGCgGCGAGUG- -5'
3067 3' -62.7 NC_001493.1 + 123425 0.66 0.589343
Target:  5'- -cGACCGGUGuCCAUCCCucaCCGaguCUCGa -3'
miRNA:   3'- gaCUGGCCAC-GGUGGGGc--GGC---GAGUg -5'
3067 3' -62.7 NC_001493.1 + 7871 0.66 0.589343
Target:  5'- -cGACCGGUGuCCAUCCCucaCCGaguCUCGa -3'
miRNA:   3'- gaCUGGCCAC-GGUGGGGc--GGC---GAGUg -5'
3067 3' -62.7 NC_001493.1 + 28220 0.66 0.589343
Target:  5'- -cGACUGGguagacgGCCGCCCgGuCCGgUCGa -3'
miRNA:   3'- gaCUGGCCa------CGGUGGGgC-GGCgAGUg -5'
3067 3' -62.7 NC_001493.1 + 87540 0.66 0.586395
Target:  5'- cCUGACCccgguGGUGCCGgucgcgggcucaccUCCCGgggCGCUCAUg -3'
miRNA:   3'- -GACUGG-----CCACGGU--------------GGGGCg--GCGAGUG- -5'
3067 3' -62.7 NC_001493.1 + 112481 0.66 0.579529
Target:  5'- -gGACCGGUGCCGCUCCaugggggaGcCCGUgaggaUACg -3'
miRNA:   3'- gaCUGGCCACGGUGGGG--------C-GGCGa----GUG- -5'
3067 3' -62.7 NC_001493.1 + 131027 0.66 0.56975
Target:  5'- -aGAcCCGGUG--GCCCCGCCGgUC-Cg -3'
miRNA:   3'- gaCU-GGCCACggUGGGGCGGCgAGuG- -5'
3067 3' -62.7 NC_001493.1 + 21232 0.66 0.568774
Target:  5'- -cGACCuucaGGccGCCGCCCCuggugaaGCCGCaUCGCc -3'
miRNA:   3'- gaCUGG----CCa-CGGUGGGG-------CGGCG-AGUG- -5'
3067 3' -62.7 NC_001493.1 + 7938 0.67 0.531101
Target:  5'- --cACCGGUGCCgACCCCGCgagaggaGCgUgGCg -3'
miRNA:   3'- gacUGGCCACGG-UGGGGCGg------CG-AgUG- -5'
3067 3' -62.7 NC_001493.1 + 123492 0.67 0.531101
Target:  5'- --cACCGGUGCCgACCCCGCgagaggaGCgUgGCg -3'
miRNA:   3'- gacUGGCCACGG-UGGGGCGg------CG-AgUG- -5'
3067 3' -62.7 NC_001493.1 + 36881 0.67 0.531101
Target:  5'- gCUGG-CGGU-CCGCCCCGCCGgUgUGCg -3'
miRNA:   3'- -GACUgGCCAcGGUGGGGCGGCgA-GUG- -5'
3067 3' -62.7 NC_001493.1 + 28655 0.67 0.525382
Target:  5'- aCUGGCCGGUGUCGaacgggaucggguggUCCUGCgCGaugaaCUCACg -3'
miRNA:   3'- -GACUGGCCACGGU---------------GGGGCG-GC-----GAGUG- -5'
3067 3' -62.7 NC_001493.1 + 93121 0.67 0.51213
Target:  5'- -gGAUC-GUGCUAUCCCGCgGC-CACg -3'
miRNA:   3'- gaCUGGcCACGGUGGGGCGgCGaGUG- -5'
3067 3' -62.7 NC_001493.1 + 107442 0.67 0.50275
Target:  5'- -gGACCGGUGUCAa--CGCCGC-CAa -3'
miRNA:   3'- gaCUGGCCACGGUgggGCGGCGaGUg -5'
3067 3' -62.7 NC_001493.1 + 108743 0.67 0.493445
Target:  5'- -cGACCGaaacuCCACCgCGuuGCUCACg -3'
miRNA:   3'- gaCUGGCcac--GGUGGgGCggCGAGUG- -5'
3067 3' -62.7 NC_001493.1 + 54889 0.67 0.484219
Target:  5'- ---cCCGGUcagCGCCCCGCCGC-CACc -3'
miRNA:   3'- gacuGGCCAcg-GUGGGGCGGCGaGUG- -5'
3067 3' -62.7 NC_001493.1 + 120096 0.68 0.475078
Target:  5'- aUG-UCGGUGaC-CCCCGCCGCUgcCGCg -3'
miRNA:   3'- gACuGGCCACgGuGGGGCGGCGA--GUG- -5'
3067 3' -62.7 NC_001493.1 + 4542 0.68 0.475078
Target:  5'- aUG-UCGGUGaC-CCCCGCCGCUgcCGCg -3'
miRNA:   3'- gACuGGCCACgGuGGGGCGGCGA--GUG- -5'
3067 3' -62.7 NC_001493.1 + 70263 0.68 0.475078
Target:  5'- gCUGuACCGGUGCCucgaCCGgUGCUgGCa -3'
miRNA:   3'- -GAC-UGGCCACGGugg-GGCgGCGAgUG- -5'
3067 3' -62.7 NC_001493.1 + 62030 0.68 0.466023
Target:  5'- -cGACCGG-GCuCGCCaUCGCCGUUCc- -3'
miRNA:   3'- gaCUGGCCaCG-GUGG-GGCGGCGAGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.