miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3067 5' -56.6 NC_001493.1 + 22105 0.66 0.87165
Target:  5'- cGGgaucGGACAGGGUCGCGau-CGGGa- -3'
miRNA:   3'- aCCa---CCUGUUCUAGUGCgacGCCCcu -5'
3067 5' -56.6 NC_001493.1 + 73560 0.66 0.87165
Target:  5'- cGcUGGACAAGGcCGauCUGUGGGGGa -3'
miRNA:   3'- aCcACCUGUUCUaGUgcGACGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 92044 0.66 0.87165
Target:  5'- gUGGUGaACAAgGAUCugGUggacgGCaGGGGGu -3'
miRNA:   3'- -ACCACcUGUU-CUAGugCGa----CG-CCCCU- -5'
3067 5' -56.6 NC_001493.1 + 111494 0.66 0.843706
Target:  5'- cGGUGagcgccaucGACGAGAgauggauccgaauuuUCAUGCccgGUGGGGAa -3'
miRNA:   3'- aCCAC---------CUGUUCU---------------AGUGCGa--CGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 87709 0.66 0.84044
Target:  5'- aGGUccgGGGguAGAUCcggcuccucguACGCcGCGGGGGg -3'
miRNA:   3'- aCCA---CCUguUCUAG-----------UGCGaCGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 87880 0.67 0.823655
Target:  5'- cGGgGGGCAgguccagggguAGAUCcggcuccucguACGCcGCGGGGGg -3'
miRNA:   3'- aCCaCCUGU-----------UCUAG-----------UGCGaCGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 87002 0.68 0.778752
Target:  5'- cUGGUGGcgugACGAccggacccgacGGUgGCGCUGCGGGu- -3'
miRNA:   3'- -ACCACC----UGUU-----------CUAgUGCGACGCCCcu -5'
3067 5' -56.6 NC_001493.1 + 108892 0.68 0.759796
Target:  5'- cGGUGGAguUucGGUCGCGCUG-GGGu- -3'
miRNA:   3'- aCCACCU--GuuCUAGUGCGACgCCCcu -5'
3067 5' -56.6 NC_001493.1 + 37502 0.68 0.727551
Target:  5'- uUGGUGGGCcucGAUCggcugcugguacuuGCGCaugugcGCGGGGAu -3'
miRNA:   3'- -ACCACCUGuu-CUAG--------------UGCGa-----CGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 16347 0.69 0.710564
Target:  5'- aGGaUGGACAGGAaggucUCG-GUgagUGCGGGGAa -3'
miRNA:   3'- aCC-ACCUGUUCU-----AGUgCG---ACGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 131901 0.69 0.710564
Target:  5'- aGGaUGGACAGGAaggucUCG-GUgagUGCGGGGAa -3'
miRNA:   3'- aCC-ACCUGUUCU-----AGUgCG---ACGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 70705 0.7 0.648323
Target:  5'- cUGG-GcGACGAGAUCAaGCUgugcaaggcccggGCGGGGAu -3'
miRNA:   3'- -ACCaC-CUGUUCUAGUgCGA-------------CGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 102228 0.71 0.612262
Target:  5'- aGGcGGcCAGGGUCgcguggcugaugagcGCGCUcGCGGGGAc -3'
miRNA:   3'- aCCaCCuGUUCUAG---------------UGCGA-CGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 95265 0.73 0.463308
Target:  5'- gGGUGGGCAGGAacugaaaaacucggUACGCgacaaacugGCGGGGGu -3'
miRNA:   3'- aCCACCUGUUCUa-------------GUGCGa--------CGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 118575 0.74 0.432084
Target:  5'- aUGGUGGAUggGA-CG-GCcGCGGGGAu -3'
miRNA:   3'- -ACCACCUGuuCUaGUgCGaCGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 3020 0.74 0.432084
Target:  5'- aUGGUGGAUggGA-CG-GCcGCGGGGAu -3'
miRNA:   3'- -ACCACCUGuuCUaGUgCGaCGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 13239 0.74 0.396121
Target:  5'- aGGUGGAUAGGAUCAagagggugaucuuCGCgUGCGGGc- -3'
miRNA:   3'- aCCACCUGUUCUAGU-------------GCG-ACGCCCcu -5'
3067 5' -56.6 NC_001493.1 + 128793 0.74 0.396121
Target:  5'- aGGUGGAUAGGAUCAagagggugaucuuCGCgUGCGGGc- -3'
miRNA:   3'- aCCACCUGUUCUAGU-------------GCG-ACGCCCcu -5'
3067 5' -56.6 NC_001493.1 + 106060 0.75 0.388489
Target:  5'- cGGUGGuCAuGAUCACuuuCUGUGGGGGg -3'
miRNA:   3'- aCCACCuGUuCUAGUGc--GACGCCCCU- -5'
3067 5' -56.6 NC_001493.1 + 32394 0.75 0.380123
Target:  5'- aGGUGGACAAGaAUCGCGCacUGGaGGAa -3'
miRNA:   3'- aCCACCUGUUC-UAGUGCGacGCC-CCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.