miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 3' -56.3 NC_006552.1 + 24454 0.66 0.701398
Target:  5'- -aGUGCAUGCGguAGucacGCGGCGUcagcuucuugcGGCuGGCg -3'
miRNA:   3'- uaCGCGUACGU--UC----UGCUGCA-----------CCG-CCG- -5'
30683 3' -56.3 NC_006552.1 + 52822 0.66 0.690654
Target:  5'- -cGCGCuucUGCAAcGGCcugcGCGUcGGCGGUg -3'
miRNA:   3'- uaCGCGu--ACGUU-CUGc---UGCA-CCGCCG- -5'
30683 3' -56.3 NC_006552.1 + 21333 0.66 0.673354
Target:  5'- uUGCGCGcgacuaacuggcccaUGC-GGugGACcaGGCGGUg -3'
miRNA:   3'- uACGCGU---------------ACGuUCugCUGcaCCGCCG- -5'
30683 3' -56.3 NC_006552.1 + 33093 0.66 0.658134
Target:  5'- -gGCGCA-GCGaagugucgcccuGGAUGGCGUacaGCGGCu -3'
miRNA:   3'- uaCGCGUaCGU------------UCUGCUGCAc--CGCCG- -5'
30683 3' -56.3 NC_006552.1 + 2005 0.66 0.658134
Target:  5'- -aGCGC-UGCAAGGCGuuGUccuGGCcGCa -3'
miRNA:   3'- uaCGCGuACGUUCUGCugCA---CCGcCG- -5'
30683 3' -56.3 NC_006552.1 + 11832 0.67 0.614486
Target:  5'- gAUGCGCuacCAGGACGAgGauGCGGCc -3'
miRNA:   3'- -UACGCGuacGUUCUGCUgCacCGCCG- -5'
30683 3' -56.3 NC_006552.1 + 4342 0.67 0.592715
Target:  5'- uGUGgGUgcGCGAGACGugGacugagugaacaUGuGCGGCg -3'
miRNA:   3'- -UACgCGuaCGUUCUGCugC------------AC-CGCCG- -5'
30683 3' -56.3 NC_006552.1 + 14874 0.68 0.581874
Target:  5'- uUGCGUcgGCAAu-CGGCGUgcuggcccuGGUGGCu -3'
miRNA:   3'- uACGCGuaCGUUcuGCUGCA---------CCGCCG- -5'
30683 3' -56.3 NC_006552.1 + 26978 0.68 0.580792
Target:  5'- aGUGCGCA-GCAgaucauuGGAC-AgGUaGGCGGCg -3'
miRNA:   3'- -UACGCGUaCGU-------UCUGcUgCA-CCGCCG- -5'
30683 3' -56.3 NC_006552.1 + 63122 0.68 0.539
Target:  5'- cGUGCGCGgccUGCugaucGAacuCGACGccGGCGGCa -3'
miRNA:   3'- -UACGCGU---ACGuu---CU---GCUGCa-CCGCCG- -5'
30683 3' -56.3 NC_006552.1 + 17322 0.69 0.515873
Target:  5'- cUGCGCAccaucaacaaggGCAccGGCcGCGUGGCGGUg -3'
miRNA:   3'- uACGCGUa-----------CGUu-CUGcUGCACCGCCG- -5'
30683 3' -56.3 NC_006552.1 + 5795 0.7 0.418602
Target:  5'- -gGCGCGgcaGCGucAGGCG--GUGGCGGCg -3'
miRNA:   3'- uaCGCGUa--CGU--UCUGCugCACCGCCG- -5'
30683 3' -56.3 NC_006552.1 + 38928 0.77 0.152478
Target:  5'- -aGCGUcgGCAGGAUGAcCGUGGCcGCg -3'
miRNA:   3'- uaCGCGuaCGUUCUGCU-GCACCGcCG- -5'
30683 3' -56.3 NC_006552.1 + 478 1.1 0.000702
Target:  5'- cAUGCGCAUGCAAGACGACGUGGCGGCg -3'
miRNA:   3'- -UACGCGUACGUUCUGCUGCACCGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.