Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30683 | 3' | -56.3 | NC_006552.1 | + | 24454 | 0.66 | 0.701398 |
Target: 5'- -aGUGCAUGCGguAGucacGCGGCGUcagcuucuugcGGCuGGCg -3' miRNA: 3'- uaCGCGUACGU--UC----UGCUGCA-----------CCG-CCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 52822 | 0.66 | 0.690654 |
Target: 5'- -cGCGCuucUGCAAcGGCcugcGCGUcGGCGGUg -3' miRNA: 3'- uaCGCGu--ACGUU-CUGc---UGCA-CCGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 21333 | 0.66 | 0.673354 |
Target: 5'- uUGCGCGcgacuaacuggcccaUGC-GGugGACcaGGCGGUg -3' miRNA: 3'- uACGCGU---------------ACGuUCugCUGcaCCGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 2005 | 0.66 | 0.658134 |
Target: 5'- -aGCGC-UGCAAGGCGuuGUccuGGCcGCa -3' miRNA: 3'- uaCGCGuACGUUCUGCugCA---CCGcCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 33093 | 0.66 | 0.658134 |
Target: 5'- -gGCGCA-GCGaagugucgcccuGGAUGGCGUacaGCGGCu -3' miRNA: 3'- uaCGCGUaCGU------------UCUGCUGCAc--CGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 11832 | 0.67 | 0.614486 |
Target: 5'- gAUGCGCuacCAGGACGAgGauGCGGCc -3' miRNA: 3'- -UACGCGuacGUUCUGCUgCacCGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 4342 | 0.67 | 0.592715 |
Target: 5'- uGUGgGUgcGCGAGACGugGacugagugaacaUGuGCGGCg -3' miRNA: 3'- -UACgCGuaCGUUCUGCugC------------AC-CGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 14874 | 0.68 | 0.581874 |
Target: 5'- uUGCGUcgGCAAu-CGGCGUgcuggcccuGGUGGCu -3' miRNA: 3'- uACGCGuaCGUUcuGCUGCA---------CCGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 26978 | 0.68 | 0.580792 |
Target: 5'- aGUGCGCA-GCAgaucauuGGAC-AgGUaGGCGGCg -3' miRNA: 3'- -UACGCGUaCGU-------UCUGcUgCA-CCGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 63122 | 0.68 | 0.539 |
Target: 5'- cGUGCGCGgccUGCugaucGAacuCGACGccGGCGGCa -3' miRNA: 3'- -UACGCGU---ACGuu---CU---GCUGCa-CCGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 17322 | 0.69 | 0.515873 |
Target: 5'- cUGCGCAccaucaacaaggGCAccGGCcGCGUGGCGGUg -3' miRNA: 3'- uACGCGUa-----------CGUu-CUGcUGCACCGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 5795 | 0.7 | 0.418602 |
Target: 5'- -gGCGCGgcaGCGucAGGCG--GUGGCGGCg -3' miRNA: 3'- uaCGCGUa--CGU--UCUGCugCACCGCCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 38928 | 0.77 | 0.152478 |
Target: 5'- -aGCGUcgGCAGGAUGAcCGUGGCcGCg -3' miRNA: 3'- uaCGCGuaCGUUCUGCU-GCACCGcCG- -5' |
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30683 | 3' | -56.3 | NC_006552.1 | + | 478 | 1.1 | 0.000702 |
Target: 5'- cAUGCGCAUGCAAGACGACGUGGCGGCg -3' miRNA: 3'- -UACGCGUACGUUCUGCUGCACCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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