miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 5' -54.9 NC_006552.1 + 444 1.13 0.000754
Target:  5'- gUGGCGCUCAACAUCGUCCAACGCGCCa -3'
miRNA:   3'- -ACCGCGAGUUGUAGCAGGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 14889 0.77 0.238659
Target:  5'- gGGCGCUCAccgaaguuGCGUCGgcaaUCGGCGUGCUg -3'
miRNA:   3'- aCCGCGAGU--------UGUAGCa---GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 52273 0.76 0.257693
Target:  5'- gUGGUGUUCGccACAagcUCGgCCAGCGCGCUg -3'
miRNA:   3'- -ACCGCGAGU--UGU---AGCaGGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 6132 0.76 0.257693
Target:  5'- cUGGCGCUCugcGCGUCGcugcguUCCuGAUGCGCUa -3'
miRNA:   3'- -ACCGCGAGu--UGUAGC------AGG-UUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 2126 0.74 0.338115
Target:  5'- aGGUGCUgGGCAUgG-CCAACGCcgucGCCg -3'
miRNA:   3'- aCCGCGAgUUGUAgCaGGUUGCG----CGG- -5'
30683 5' -54.9 NC_006552.1 + 56862 0.73 0.371568
Target:  5'- cGcGCaGCUCAGCAUCgGUCCAgACGaUGCCu -3'
miRNA:   3'- aC-CG-CGAGUUGUAG-CAGGU-UGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 30967 0.73 0.38912
Target:  5'- cGGCGCUCGAC-UCGgcuUCCGaguuguACGCGgCg -3'
miRNA:   3'- aCCGCGAGUUGuAGC---AGGU------UGCGCgG- -5'
30683 5' -54.9 NC_006552.1 + 29028 0.73 0.38912
Target:  5'- cGGCGCUggccucgcCAGCAUCG-CCGGCacccGCGUCg -3'
miRNA:   3'- aCCGCGA--------GUUGUAGCaGGUUG----CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 16765 0.73 0.407207
Target:  5'- aGGUGCUCGGCggacacacugcuGUCGUCUGGCuCGCUg -3'
miRNA:   3'- aCCGCGAGUUG------------UAGCAGGUUGcGCGG- -5'
30683 5' -54.9 NC_006552.1 + 33212 0.72 0.425811
Target:  5'- gUGGUGCUCGGCGugaaUC-UCCGGCuGCGCg -3'
miRNA:   3'- -ACCGCGAGUUGU----AGcAGGUUG-CGCGg -5'
30683 5' -54.9 NC_006552.1 + 43607 0.72 0.425811
Target:  5'- aGGCGCUauGCGgaugcaCCAGCGCGCCc -3'
miRNA:   3'- aCCGCGAguUGUagca--GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 49671 0.72 0.435301
Target:  5'- gGGCcuGCUgGAUGUCGUCCuGCaCGCCg -3'
miRNA:   3'- aCCG--CGAgUUGUAGCAGGuUGcGCGG- -5'
30683 5' -54.9 NC_006552.1 + 23998 0.72 0.435301
Target:  5'- -cGCGaUCAGCGUCGUaaagccgagCUGACGCGCCu -3'
miRNA:   3'- acCGCgAGUUGUAGCA---------GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 42040 0.72 0.444912
Target:  5'- -cGCGCUCgAACAcCGgcaCCAGCGcCGCCa -3'
miRNA:   3'- acCGCGAG-UUGUaGCa--GGUUGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 23805 0.72 0.454641
Target:  5'- aGGCGCcacUCAGgGUCaG-CCAggcaGCGCGCCa -3'
miRNA:   3'- aCCGCG---AGUUgUAG-CaGGU----UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 47241 0.71 0.474436
Target:  5'- aGGCGCgccgaguuacCGGCGUUGUacugagCCAACGCGUCc -3'
miRNA:   3'- aCCGCGa---------GUUGUAGCA------GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 20601 0.71 0.484494
Target:  5'- aGGCGCUCGuagGCGgcaaugaaCG-CCAugcGCGCGCCc -3'
miRNA:   3'- aCCGCGAGU---UGUa-------GCaGGU---UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 64438 0.7 0.525685
Target:  5'- cGGCGCUCGAUggC-UCCGAcaacCGCaGCCa -3'
miRNA:   3'- aCCGCGAGUUGuaGcAGGUU----GCG-CGG- -5'
30683 5' -54.9 NC_006552.1 + 31794 0.7 0.525685
Target:  5'- cGGCGCUUAGacugCG-CCGAgGCGCUc -3'
miRNA:   3'- aCCGCGAGUUgua-GCaGGUUgCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 30836 0.7 0.525685
Target:  5'- gGGUGCU--GCuuggCGUUCGACGCGCg -3'
miRNA:   3'- aCCGCGAguUGua--GCAGGUUGCGCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.