Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 444 | 1.13 | 0.000754 |
Target: 5'- gUGGCGCUCAACAUCGUCCAACGCGCCa -3' miRNA: 3'- -ACCGCGAGUUGUAGCAGGUUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 14889 | 0.77 | 0.238659 |
Target: 5'- gGGCGCUCAccgaaguuGCGUCGgcaaUCGGCGUGCUg -3' miRNA: 3'- aCCGCGAGU--------UGUAGCa---GGUUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 52273 | 0.76 | 0.257693 |
Target: 5'- gUGGUGUUCGccACAagcUCGgCCAGCGCGCUg -3' miRNA: 3'- -ACCGCGAGU--UGU---AGCaGGUUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 6132 | 0.76 | 0.257693 |
Target: 5'- cUGGCGCUCugcGCGUCGcugcguUCCuGAUGCGCUa -3' miRNA: 3'- -ACCGCGAGu--UGUAGC------AGG-UUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 2126 | 0.74 | 0.338115 |
Target: 5'- aGGUGCUgGGCAUgG-CCAACGCcgucGCCg -3' miRNA: 3'- aCCGCGAgUUGUAgCaGGUUGCG----CGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 56862 | 0.73 | 0.371568 |
Target: 5'- cGcGCaGCUCAGCAUCgGUCCAgACGaUGCCu -3' miRNA: 3'- aC-CG-CGAGUUGUAG-CAGGU-UGC-GCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 30967 | 0.73 | 0.38912 |
Target: 5'- cGGCGCUCGAC-UCGgcuUCCGaguuguACGCGgCg -3' miRNA: 3'- aCCGCGAGUUGuAGC---AGGU------UGCGCgG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 29028 | 0.73 | 0.38912 |
Target: 5'- cGGCGCUggccucgcCAGCAUCG-CCGGCacccGCGUCg -3' miRNA: 3'- aCCGCGA--------GUUGUAGCaGGUUG----CGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 16765 | 0.73 | 0.407207 |
Target: 5'- aGGUGCUCGGCggacacacugcuGUCGUCUGGCuCGCUg -3' miRNA: 3'- aCCGCGAGUUG------------UAGCAGGUUGcGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 33212 | 0.72 | 0.425811 |
Target: 5'- gUGGUGCUCGGCGugaaUC-UCCGGCuGCGCg -3' miRNA: 3'- -ACCGCGAGUUGU----AGcAGGUUG-CGCGg -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 43607 | 0.72 | 0.425811 |
Target: 5'- aGGCGCUauGCGgaugcaCCAGCGCGCCc -3' miRNA: 3'- aCCGCGAguUGUagca--GGUUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 49671 | 0.72 | 0.435301 |
Target: 5'- gGGCcuGCUgGAUGUCGUCCuGCaCGCCg -3' miRNA: 3'- aCCG--CGAgUUGUAGCAGGuUGcGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 23998 | 0.72 | 0.435301 |
Target: 5'- -cGCGaUCAGCGUCGUaaagccgagCUGACGCGCCu -3' miRNA: 3'- acCGCgAGUUGUAGCA---------GGUUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 42040 | 0.72 | 0.444912 |
Target: 5'- -cGCGCUCgAACAcCGgcaCCAGCGcCGCCa -3' miRNA: 3'- acCGCGAG-UUGUaGCa--GGUUGC-GCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 23805 | 0.72 | 0.454641 |
Target: 5'- aGGCGCcacUCAGgGUCaG-CCAggcaGCGCGCCa -3' miRNA: 3'- aCCGCG---AGUUgUAG-CaGGU----UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 47241 | 0.71 | 0.474436 |
Target: 5'- aGGCGCgccgaguuacCGGCGUUGUacugagCCAACGCGUCc -3' miRNA: 3'- aCCGCGa---------GUUGUAGCA------GGUUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 20601 | 0.71 | 0.484494 |
Target: 5'- aGGCGCUCGuagGCGgcaaugaaCG-CCAugcGCGCGCCc -3' miRNA: 3'- aCCGCGAGU---UGUa-------GCaGGU---UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 64438 | 0.7 | 0.525685 |
Target: 5'- cGGCGCUCGAUggC-UCCGAcaacCGCaGCCa -3' miRNA: 3'- aCCGCGAGUUGuaGcAGGUU----GCG-CGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 31794 | 0.7 | 0.525685 |
Target: 5'- cGGCGCUUAGacugCG-CCGAgGCGCUc -3' miRNA: 3'- aCCGCGAGUUgua-GCaGGUUgCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 30836 | 0.7 | 0.525685 |
Target: 5'- gGGUGCU--GCuuggCGUUCGACGCGCg -3' miRNA: 3'- aCCGCGAguUGua--GCAGGUUGCGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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