miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 5' -54.9 NC_006552.1 + 444 1.13 0.000754
Target:  5'- gUGGCGCUCAACAUCGUCCAACGCGCCa -3'
miRNA:   3'- -ACCGCGAGUUGUAGCAGGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 579 0.67 0.719361
Target:  5'- cUGGUGCUcCAGCAccaCGguacggCCGACGCuguucGCCg -3'
miRNA:   3'- -ACCGCGA-GUUGUa--GCa-----GGUUGCG-----CGG- -5'
30683 5' -54.9 NC_006552.1 + 2126 0.74 0.338115
Target:  5'- aGGUGCUgGGCAUgG-CCAACGCcgucGCCg -3'
miRNA:   3'- aCCGCGAgUUGUAgCaGGUUGCG----CGG- -5'
30683 5' -54.9 NC_006552.1 + 3846 0.68 0.687367
Target:  5'- aGGacaGCcgcagCAACGUCGggagCCGggccauguuuugGCGCGCCg -3'
miRNA:   3'- aCCg--CGa----GUUGUAGCa---GGU------------UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 4636 0.69 0.600518
Target:  5'- cGGCGaCUCGccGCAggcaUGUCCcucgagGACGCGCUg -3'
miRNA:   3'- aCCGC-GAGU--UGUa---GCAGG------UUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 5796 0.67 0.740286
Target:  5'- gGGCGCggCAGCGUCaggCgGugGCGgCg -3'
miRNA:   3'- aCCGCGa-GUUGUAGca-GgUugCGCgG- -5'
30683 5' -54.9 NC_006552.1 + 6132 0.76 0.257693
Target:  5'- cUGGCGCUCugcGCGUCGcugcguUCCuGAUGCGCUa -3'
miRNA:   3'- -ACCGCGAGu--UGUAGC------AGG-UUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 6415 0.66 0.770844
Target:  5'- aGGCaacUUCAAa--CGUCCAGCagGCGCCg -3'
miRNA:   3'- aCCGc--GAGUUguaGCAGGUUG--CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 7867 0.66 0.800144
Target:  5'- cUGGCGCagcUCGACAUCuUCCA-CGacaccaaggaGCCc -3'
miRNA:   3'- -ACCGCG---AGUUGUAGcAGGUuGCg---------CGG- -5'
30683 5' -54.9 NC_006552.1 + 8308 0.68 0.654905
Target:  5'- gGGUuccGCUCAACGUCGg-CGAggagugguacCGCGCCc -3'
miRNA:   3'- aCCG---CGAGUUGUAGCagGUU----------GCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 8920 0.67 0.740286
Target:  5'- cGGCGUcCGcCAguUCGccaUCCAGCaGCGCCu -3'
miRNA:   3'- aCCGCGaGUuGU--AGC---AGGUUG-CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 11076 0.69 0.611379
Target:  5'- aGGCuCUgGcGCAUCGUCUGA-GCGCCg -3'
miRNA:   3'- aCCGcGAgU-UGUAGCAGGUUgCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 11606 0.66 0.780765
Target:  5'- gUGGCGC-CGGCca-GUUCggUGcCGCCg -3'
miRNA:   3'- -ACCGCGaGUUGuagCAGGuuGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 13055 0.67 0.750593
Target:  5'- gUGGCGCgcccGCGUCGUUgAuaaaacCGCGCUc -3'
miRNA:   3'- -ACCGCGagu-UGUAGCAGgUu-----GCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 14889 0.77 0.238659
Target:  5'- gGGCGCUCAccgaaguuGCGUCGgcaaUCGGCGUGCUg -3'
miRNA:   3'- aCCGCGAGU--------UGUAGCa---GGUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 15480 0.66 0.757739
Target:  5'- cGGUGCUgAugAUCGaggaaggcauuacggCGAUGCGCCg -3'
miRNA:   3'- aCCGCGAgUugUAGCag-------------GUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 16765 0.73 0.407207
Target:  5'- aGGUGCUCGGCggacacacugcuGUCGUCUGGCuCGCUg -3'
miRNA:   3'- aCCGCGAGUUG------------UAGCAGGUUGcGCGG- -5'
30683 5' -54.9 NC_006552.1 + 19349 0.66 0.760783
Target:  5'- gGGCGUagaaaUCAccuGCGggCGUCUgaaccaGGCGCGCCc -3'
miRNA:   3'- aCCGCG-----AGU---UGUa-GCAGG------UUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 20601 0.71 0.484494
Target:  5'- aGGCGCUCGuagGCGgcaaugaaCG-CCAugcGCGCGCCc -3'
miRNA:   3'- aCCGCGAGU---UGUa-------GCaGGU---UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 21014 0.67 0.708766
Target:  5'- cGGCGCgcCGACG--GUCCAugucuuCGCGCUc -3'
miRNA:   3'- aCCGCGa-GUUGUagCAGGUu-----GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.