miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30684 3' -53.9 NC_006552.1 + 1087 1.11 0.001308
Target:  5'- aACAUUCCGGACGACCGCAAGCUGUGCc -3'
miRNA:   3'- -UGUAAGGCCUGCUGGCGUUCGACACG- -5'
30684 3' -53.9 NC_006552.1 + 1967 0.72 0.490275
Target:  5'- ---cUCgCGGcACGugCGCcGGCUGUGCc -3'
miRNA:   3'- uguaAG-GCC-UGCugGCGuUCGACACG- -5'
30684 3' -53.9 NC_006552.1 + 707 0.7 0.6188
Target:  5'- cGCAcgCUGG-CGGCCugGCAGGCgggGUGCu -3'
miRNA:   3'- -UGUaaGGCCuGCUGG--CGUUCGa--CACG- -5'
30684 3' -53.9 NC_006552.1 + 26245 0.69 0.673655
Target:  5'- uGCgg-CCGGACGccAgCGCGAuGUUGUGCg -3'
miRNA:   3'- -UGuaaGGCCUGC--UgGCGUU-CGACACG- -5'
30684 3' -53.9 NC_006552.1 + 22967 0.68 0.706181
Target:  5'- gUAUUCCuGGACGaacGCCGCuuGUUGUGa -3'
miRNA:   3'- uGUAAGG-CCUGC---UGGCGuuCGACACg -5'
30684 3' -53.9 NC_006552.1 + 26740 0.67 0.768975
Target:  5'- -uGUUCCuGGAUG-CCGCugguGGCcGUGCc -3'
miRNA:   3'- ugUAAGG-CCUGCuGGCGu---UCGaCACG- -5'
30684 3' -53.9 NC_006552.1 + 2828 0.67 0.779015
Target:  5'- aGCAcUCCaGugGACCGCAA-CUGUuCg -3'
miRNA:   3'- -UGUaAGGcCugCUGGCGUUcGACAcG- -5'
30684 3' -53.9 NC_006552.1 + 54144 0.67 0.787922
Target:  5'- gGCGgccgCCGGGCuucagcaGGCUGUAGGC-GUGCu -3'
miRNA:   3'- -UGUaa--GGCCUG-------CUGGCGUUCGaCACG- -5'
30684 3' -53.9 NC_006552.1 + 49562 0.66 0.798629
Target:  5'- gGCGUUCUGGugGcGCUGCucauccuGCUGguccucgGCg -3'
miRNA:   3'- -UGUAAGGCCugC-UGGCGuu-----CGACa------CG- -5'
30684 3' -53.9 NC_006552.1 + 30378 0.66 0.826723
Target:  5'- ---cUUCGGACGGCCG-AGGCg--GCg -3'
miRNA:   3'- uguaAGGCCUGCUGGCgUUCGacaCG- -5'
30684 3' -53.9 NC_006552.1 + 49863 0.66 0.834805
Target:  5'- ---cUCCGcGACGcacggccugcagcGCCGCAGGCUGcucgaGCu -3'
miRNA:   3'- uguaAGGC-CUGC-------------UGGCGUUCGACa----CG- -5'
30684 3' -53.9 NC_006552.1 + 49610 0.66 0.835693
Target:  5'- ---gUCCaGGGCGaaGCCGCGAGCacggGCg -3'
miRNA:   3'- uguaAGG-CCUGC--UGGCGUUCGaca-CG- -5'
30684 3' -53.9 NC_006552.1 + 22360 0.66 0.835693
Target:  5'- cCAgggUCUGGcgaguaACGAuCUGCugcuGGCUGUGCa -3'
miRNA:   3'- uGUa--AGGCC------UGCU-GGCGu---UCGACACG- -5'
30684 3' -53.9 NC_006552.1 + 33717 0.66 0.84445
Target:  5'- gACAgguaCUGGugGAUCGCAGuCUGcgGCg -3'
miRNA:   3'- -UGUaa--GGCCugCUGGCGUUcGACa-CG- -5'
30684 3' -53.9 NC_006552.1 + 24920 0.66 0.84445
Target:  5'- cGCAUUUCcuuGACGuaguGCCGCAGGUcuucguugUGUGCc -3'
miRNA:   3'- -UGUAAGGc--CUGC----UGGCGUUCG--------ACACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.