Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 464 | 0.72 | 0.168766 |
Target: 5'- aCGACGUGGCg-GCGCUGCaggUGGCGCu -3' miRNA: 3'- -GUUGCGUCGagCGCGGCGgg-ACCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 1053 | 1.11 | 0.000197 |
Target: 5'- gCAACGCAGCUCGCGCCGCCCUGGCGCa -3' miRNA: 3'- -GUUGCGUCGAGCGCGGCGGGACCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 2006 | 0.7 | 0.223249 |
Target: 5'- gAGCGCuGCaagGCGuuGUCCUGGcCGCa -3' miRNA: 3'- gUUGCGuCGag-CGCggCGGGACC-GCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 4944 | 0.68 | 0.313398 |
Target: 5'- gCAACGCGGCcgCGCGCgGgcuuuCCCgccGCGCc -3' miRNA: 3'- -GUUGCGUCGa-GCGCGgC-----GGGac-CGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 5850 | 0.69 | 0.246504 |
Target: 5'- aCAGCGuCAGC-C-CGCCGCCgaUGGCaGCg -3' miRNA: 3'- -GUUGC-GUCGaGcGCGGCGGg-ACCG-CG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 7890 | 0.68 | 0.320796 |
Target: 5'- uCAACGauGCcgCGCGCaguGgCCUGGCGCa -3' miRNA: 3'- -GUUGCguCGa-GCGCGg--CgGGACCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 8213 | 0.67 | 0.335981 |
Target: 5'- gGGCGUGGUgaucgagaacCGCGaCGCUCUGGUGCu -3' miRNA: 3'- gUUGCGUCGa---------GCGCgGCGGGACCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 8299 | 0.67 | 0.326807 |
Target: 5'- uCAACGuCGGCgaggagugguacCGCGcCCGCgcuggaCUGGCGCa -3' miRNA: 3'- -GUUGC-GUCGa-----------GCGC-GGCGg-----GACCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 8470 | 0.74 | 0.116794 |
Target: 5'- --cCGUGGCgaggaacUGCGCCagGCCCUGGCGCu -3' miRNA: 3'- guuGCGUCGa------GCGCGG--CGGGACCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 11206 | 0.66 | 0.428567 |
Target: 5'- ---gGCAgGCcaggCGCGUgGCCCUGGCc- -3' miRNA: 3'- guugCGU-CGa---GCGCGgCGGGACCGcg -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 11894 | 0.71 | 0.191885 |
Target: 5'- -cGCGCAGC-C-CGCCGCgC-GGCGCa -3' miRNA: 3'- guUGCGUCGaGcGCGGCGgGaCCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 13083 | 0.68 | 0.320796 |
Target: 5'- gCAAgGCAGCagagcccaGCGCUaCCCagUGGCGCg -3' miRNA: 3'- -GUUgCGUCGag------CGCGGcGGG--ACCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 13838 | 0.72 | 0.168766 |
Target: 5'- aCAACGCAaCcaaCGCCGCCCUGGCa- -3' miRNA: 3'- -GUUGCGUcGagcGCGGCGGGACCGcg -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 14873 | 0.66 | 0.393171 |
Target: 5'- -uGCGuCGGCaaucggCGUGCUgGCCCUGGUGg -3' miRNA: 3'- guUGC-GUCGa-----GCGCGG-CGGGACCGCg -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 14909 | 0.67 | 0.328323 |
Target: 5'- aAAUGCGaCUgGCGcCCGCCg-GGCGCu -3' miRNA: 3'- gUUGCGUcGAgCGC-GGCGGgaCCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 15345 | 0.66 | 0.401841 |
Target: 5'- -uGCGCcaccGGCUCGaCGCCGCgUcGGaCGCc -3' miRNA: 3'- guUGCG----UCGAGC-GCGGCGgGaCC-GCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 19816 | 0.69 | 0.246504 |
Target: 5'- gCAGCGCGGCcCGgGCUcuuGCUC-GGCGCc -3' miRNA: 3'- -GUUGCGUCGaGCgCGG---CGGGaCCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 20005 | 0.72 | 0.168766 |
Target: 5'- gAACGCGGCcaccuuuggCGCGUCGgCCUGGCcCa -3' miRNA: 3'- gUUGCGUCGa--------GCGCGGCgGGACCGcG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 20739 | 0.66 | 0.410632 |
Target: 5'- ---aGCAGCaacUGCGCUGCC--GGCGCc -3' miRNA: 3'- guugCGUCGa--GCGCGGCGGgaCCGCG- -5' |
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30684 | 5' | -62.1 | NC_006552.1 | + | 21138 | 0.68 | 0.313398 |
Target: 5'- ---gGUAGaUCG-GCCGCCC-GGCGCg -3' miRNA: 3'- guugCGUCgAGCgCGGCGGGaCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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