miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30684 5' -62.1 NC_006552.1 + 464 0.72 0.168766
Target:  5'- aCGACGUGGCg-GCGCUGCaggUGGCGCu -3'
miRNA:   3'- -GUUGCGUCGagCGCGGCGgg-ACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 1053 1.11 0.000197
Target:  5'- gCAACGCAGCUCGCGCCGCCCUGGCGCa -3'
miRNA:   3'- -GUUGCGUCGAGCGCGGCGGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 2006 0.7 0.223249
Target:  5'- gAGCGCuGCaagGCGuuGUCCUGGcCGCa -3'
miRNA:   3'- gUUGCGuCGag-CGCggCGGGACC-GCG- -5'
30684 5' -62.1 NC_006552.1 + 4944 0.68 0.313398
Target:  5'- gCAACGCGGCcgCGCGCgGgcuuuCCCgccGCGCc -3'
miRNA:   3'- -GUUGCGUCGa-GCGCGgC-----GGGac-CGCG- -5'
30684 5' -62.1 NC_006552.1 + 5850 0.69 0.246504
Target:  5'- aCAGCGuCAGC-C-CGCCGCCgaUGGCaGCg -3'
miRNA:   3'- -GUUGC-GUCGaGcGCGGCGGg-ACCG-CG- -5'
30684 5' -62.1 NC_006552.1 + 7890 0.68 0.320796
Target:  5'- uCAACGauGCcgCGCGCaguGgCCUGGCGCa -3'
miRNA:   3'- -GUUGCguCGa-GCGCGg--CgGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 8213 0.67 0.335981
Target:  5'- gGGCGUGGUgaucgagaacCGCGaCGCUCUGGUGCu -3'
miRNA:   3'- gUUGCGUCGa---------GCGCgGCGGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 8299 0.67 0.326807
Target:  5'- uCAACGuCGGCgaggagugguacCGCGcCCGCgcuggaCUGGCGCa -3'
miRNA:   3'- -GUUGC-GUCGa-----------GCGC-GGCGg-----GACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 8470 0.74 0.116794
Target:  5'- --cCGUGGCgaggaacUGCGCCagGCCCUGGCGCu -3'
miRNA:   3'- guuGCGUCGa------GCGCGG--CGGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 11206 0.66 0.428567
Target:  5'- ---gGCAgGCcaggCGCGUgGCCCUGGCc- -3'
miRNA:   3'- guugCGU-CGa---GCGCGgCGGGACCGcg -5'
30684 5' -62.1 NC_006552.1 + 11894 0.71 0.191885
Target:  5'- -cGCGCAGC-C-CGCCGCgC-GGCGCa -3'
miRNA:   3'- guUGCGUCGaGcGCGGCGgGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 13083 0.68 0.320796
Target:  5'- gCAAgGCAGCagagcccaGCGCUaCCCagUGGCGCg -3'
miRNA:   3'- -GUUgCGUCGag------CGCGGcGGG--ACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 13838 0.72 0.168766
Target:  5'- aCAACGCAaCcaaCGCCGCCCUGGCa- -3'
miRNA:   3'- -GUUGCGUcGagcGCGGCGGGACCGcg -5'
30684 5' -62.1 NC_006552.1 + 14873 0.66 0.393171
Target:  5'- -uGCGuCGGCaaucggCGUGCUgGCCCUGGUGg -3'
miRNA:   3'- guUGC-GUCGa-----GCGCGG-CGGGACCGCg -5'
30684 5' -62.1 NC_006552.1 + 14909 0.67 0.328323
Target:  5'- aAAUGCGaCUgGCGcCCGCCg-GGCGCu -3'
miRNA:   3'- gUUGCGUcGAgCGC-GGCGGgaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 15345 0.66 0.401841
Target:  5'- -uGCGCcaccGGCUCGaCGCCGCgUcGGaCGCc -3'
miRNA:   3'- guUGCG----UCGAGC-GCGGCGgGaCC-GCG- -5'
30684 5' -62.1 NC_006552.1 + 19816 0.69 0.246504
Target:  5'- gCAGCGCGGCcCGgGCUcuuGCUC-GGCGCc -3'
miRNA:   3'- -GUUGCGUCGaGCgCGG---CGGGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 20005 0.72 0.168766
Target:  5'- gAACGCGGCcaccuuuggCGCGUCGgCCUGGCcCa -3'
miRNA:   3'- gUUGCGUCGa--------GCGCGGCgGGACCGcG- -5'
30684 5' -62.1 NC_006552.1 + 20739 0.66 0.410632
Target:  5'- ---aGCAGCaacUGCGCUGCC--GGCGCc -3'
miRNA:   3'- guugCGUCGa--GCGCGGCGGgaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 21138 0.68 0.313398
Target:  5'- ---gGUAGaUCG-GCCGCCC-GGCGCg -3'
miRNA:   3'- guugCGUCgAGCgCGGCGGGaCCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.