miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30684 5' -62.1 NC_006552.1 + 11206 0.66 0.428567
Target:  5'- ---gGCAgGCcaggCGCGUgGCCCUGGCc- -3'
miRNA:   3'- guugCGU-CGa---GCGCGgCGGGACCGcg -5'
30684 5' -62.1 NC_006552.1 + 45243 0.69 0.278354
Target:  5'- aGGCGCGGCcUGCGCaucgagcacgucCGCCUUGGC-Cg -3'
miRNA:   3'- gUUGCGUCGaGCGCG------------GCGGGACCGcG- -5'
30684 5' -62.1 NC_006552.1 + 31056 0.68 0.285105
Target:  5'- gGAUGCcgcccaGGCUUGCgccagagccugGCCGCCCagcagcagGGCGCg -3'
miRNA:   3'- gUUGCG------UCGAGCG-----------CGGCGGGa-------CCGCG- -5'
30684 5' -62.1 NC_006552.1 + 60235 0.68 0.298993
Target:  5'- uCGGC-CAGCUUG-GCCucaGCCUUGGCGUu -3'
miRNA:   3'- -GUUGcGUCGAGCgCGG---CGGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 36778 0.68 0.298993
Target:  5'- gUAGCGCGGCUCGaUGCUGauaCCgcgaaUGGCGa -3'
miRNA:   3'- -GUUGCGUCGAGC-GCGGCg--GG-----ACCGCg -5'
30684 5' -62.1 NC_006552.1 + 21138 0.68 0.313398
Target:  5'- ---gGUAGaUCG-GCCGCCC-GGCGCg -3'
miRNA:   3'- guugCGUCgAGCgCGGCGGGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 4944 0.68 0.313398
Target:  5'- gCAACGCGGCcgCGCGCgGgcuuuCCCgccGCGCc -3'
miRNA:   3'- -GUUGCGUCGa-GCGCGgC-----GGGac-CGCG- -5'
30684 5' -62.1 NC_006552.1 + 32893 0.68 0.313398
Target:  5'- uCGAUGCGGCacacgGCGUCGgCCUGGCu- -3'
miRNA:   3'- -GUUGCGUCGag---CGCGGCgGGACCGcg -5'
30684 5' -62.1 NC_006552.1 + 40767 0.68 0.316342
Target:  5'- aGACGCAcguuuccaagcuGCUCGCGCaccagcgccauguagCGCUCUGGUaccaGCa -3'
miRNA:   3'- gUUGCGU------------CGAGCGCG---------------GCGGGACCG----CG- -5'
30684 5' -62.1 NC_006552.1 + 46882 0.69 0.278354
Target:  5'- gGGCGCAGCacuggaacuUgGCGCCGCugcacCCUGG-GCu -3'
miRNA:   3'- gUUGCGUCG---------AgCGCGGCG-----GGACCgCG- -5'
30684 5' -62.1 NC_006552.1 + 5850 0.69 0.246504
Target:  5'- aCAGCGuCAGC-C-CGCCGCCgaUGGCaGCg -3'
miRNA:   3'- -GUUGC-GUCGaGcGCGGCGGg-ACCG-CG- -5'
30684 5' -62.1 NC_006552.1 + 19816 0.69 0.246504
Target:  5'- gCAGCGCGGCcCGgGCUcuuGCUC-GGCGCc -3'
miRNA:   3'- -GUUGCGUCGaGCgCGG---CGGGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 33094 0.79 0.05304
Target:  5'- aGGCGCAGCgaaGUGUCGCCCUGGaugGCg -3'
miRNA:   3'- gUUGCGUCGag-CGCGGCGGGACCg--CG- -5'
30684 5' -62.1 NC_006552.1 + 8470 0.74 0.116794
Target:  5'- --cCGUGGCgaggaacUGCGCCagGCCCUGGCGCu -3'
miRNA:   3'- guuGCGUCGa------GCGCGG--CGGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 29330 0.73 0.133375
Target:  5'- gCGACGUcggGGcCUCGC-CUGCCgUGGCGCg -3'
miRNA:   3'- -GUUGCG---UC-GAGCGcGGCGGgACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 13838 0.72 0.168766
Target:  5'- aCAACGCAaCcaaCGCCGCCCUGGCa- -3'
miRNA:   3'- -GUUGCGUcGagcGCGGCGGGACCGcg -5'
30684 5' -62.1 NC_006552.1 + 20005 0.72 0.168766
Target:  5'- gAACGCGGCcaccuuuggCGCGUCGgCCUGGCcCa -3'
miRNA:   3'- gUUGCGUCGa--------GCGCGGCgGGACCGcG- -5'
30684 5' -62.1 NC_006552.1 + 464 0.72 0.168766
Target:  5'- aCGACGUGGCg-GCGCUGCaggUGGCGCu -3'
miRNA:   3'- -GUUGCGUCGagCGCGGCGgg-ACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 11894 0.71 0.191885
Target:  5'- -cGCGCAGC-C-CGCCGCgC-GGCGCa -3'
miRNA:   3'- guUGCGUCGaGcGCGGCGgGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 2006 0.7 0.223249
Target:  5'- gAGCGCuGCaagGCGuuGUCCUGGcCGCa -3'
miRNA:   3'- gUUGCGuCGag-CGCggCGGGACC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.