Results 21 - 40 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 8213 | 0.67 | 0.335981 |
Target: 5'- gGGCGUGGUgaucgagaacCGCGaCGCUCUGGUGCu -3' miRNA: 3'- gUUGCGUCGa---------GCGCgGCGGGACCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 24742 | 0.67 | 0.335981 |
Target: 5'- -uGCGCAGCgUCGCcaUGuCCUUGGCGUa -3' miRNA: 3'- guUGCGUCG-AGCGcgGC-GGGACCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 30105 | 0.67 | 0.335981 |
Target: 5'- uCGGCGUcGCUgGUGCCGCUC-GGCa- -3' miRNA: 3'- -GUUGCGuCGAgCGCGGCGGGaCCGcg -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 57980 | 0.67 | 0.335981 |
Target: 5'- -cGCGCAGCgagcCGCuGCCGCgggCCU-GCGCc -3' miRNA: 3'- guUGCGUCGa---GCG-CGGCG---GGAcCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 14909 | 0.67 | 0.328323 |
Target: 5'- aAAUGCGaCUgGCGcCCGCCg-GGCGCu -3' miRNA: 3'- gUUGCGUcGAgCGC-GGCGGgaCCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 8299 | 0.67 | 0.326807 |
Target: 5'- uCAACGuCGGCgaggagugguacCGCGcCCGCgcuggaCUGGCGCa -3' miRNA: 3'- -GUUGC-GUCGa-----------GCGC-GGCGg-----GACCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 58186 | 0.68 | 0.320796 |
Target: 5'- gAACuGCGuCUCGCGCacgGCCC-GGCGUg -3' miRNA: 3'- gUUG-CGUcGAGCGCGg--CGGGaCCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 7890 | 0.68 | 0.320796 |
Target: 5'- uCAACGauGCcgCGCGCaguGgCCUGGCGCa -3' miRNA: 3'- -GUUGCguCGa-GCGCGg--CgGGACCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 13083 | 0.68 | 0.320796 |
Target: 5'- gCAAgGCAGCagagcccaGCGCUaCCCagUGGCGCg -3' miRNA: 3'- -GUUgCGUCGag------CGCGGcGGG--ACCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 40767 | 0.68 | 0.316342 |
Target: 5'- aGACGCAcguuuccaagcuGCUCGCGCaccagcgccauguagCGCUCUGGUaccaGCa -3' miRNA: 3'- gUUGCGU------------CGAGCGCG---------------GCGGGACCG----CG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 21138 | 0.68 | 0.313398 |
Target: 5'- ---gGUAGaUCG-GCCGCCC-GGCGCg -3' miRNA: 3'- guugCGUCgAGCgCGGCGGGaCCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 4944 | 0.68 | 0.313398 |
Target: 5'- gCAACGCGGCcgCGCGCgGgcuuuCCCgccGCGCc -3' miRNA: 3'- -GUUGCGUCGa-GCGCGgC-----GGGac-CGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 32893 | 0.68 | 0.313398 |
Target: 5'- uCGAUGCGGCacacgGCGUCGgCCUGGCu- -3' miRNA: 3'- -GUUGCGUCGag---CGCGGCgGGACCGcg -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 36778 | 0.68 | 0.298993 |
Target: 5'- gUAGCGCGGCUCGaUGCUGauaCCgcgaaUGGCGa -3' miRNA: 3'- -GUUGCGUCGAGC-GCGGCg--GG-----ACCGCg -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 60235 | 0.68 | 0.298993 |
Target: 5'- uCGGC-CAGCUUG-GCCucaGCCUUGGCGUu -3' miRNA: 3'- -GUUGcGUCGAGCgCGG---CGGGACCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 31056 | 0.68 | 0.285105 |
Target: 5'- gGAUGCcgcccaGGCUUGCgccagagccugGCCGCCCagcagcagGGCGCg -3' miRNA: 3'- gUUGCG------UCGAGCG-----------CGGCGGGa-------CCGCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 45243 | 0.69 | 0.278354 |
Target: 5'- aGGCGCGGCcUGCGCaucgagcacgucCGCCUUGGC-Cg -3' miRNA: 3'- gUUGCGUCGaGCGCG------------GCGGGACCGcG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 46882 | 0.69 | 0.278354 |
Target: 5'- gGGCGCAGCacuggaacuUgGCGCCGCugcacCCUGG-GCu -3' miRNA: 3'- gUUGCGUCG---------AgCGCGGCG-----GGACCgCG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 5850 | 0.69 | 0.246504 |
Target: 5'- aCAGCGuCAGC-C-CGCCGCCgaUGGCaGCg -3' miRNA: 3'- -GUUGC-GUCGaGcGCGGCGGg-ACCG-CG- -5' |
|||||||
30684 | 5' | -62.1 | NC_006552.1 | + | 19816 | 0.69 | 0.246504 |
Target: 5'- gCAGCGCGGCcCGgGCUcuuGCUC-GGCGCc -3' miRNA: 3'- -GUUGCGUCGaGCgCGG---CGGGaCCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home