Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30685 | 3' | -65.3 | NC_006552.1 | + | 44114 | 0.66 | 0.303635 |
Target: 5'- --aGGCCcCCAGGGGCUU--CCGGCu -3' miRNA: 3'- ggaCCGGcGGUUCCCGGAccGGCCGu -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 37793 | 0.66 | 0.289838 |
Target: 5'- --gGGCCGUaaUAGGGGCCacGGUcuaCGGCAg -3' miRNA: 3'- ggaCCGGCG--GUUCCCGGa-CCG---GCCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 43401 | 0.66 | 0.283126 |
Target: 5'- gCCUGGCCGCCGu---CCUGGUCGc-- -3' miRNA: 3'- -GGACCGGCGGUucccGGACCGGCcgu -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 62422 | 0.66 | 0.283126 |
Target: 5'- --gGGUgGCCGAGGGCg-GGCC-GCGg -3' miRNA: 3'- ggaCCGgCGGUUCCCGgaCCGGcCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 61977 | 0.66 | 0.283126 |
Target: 5'- gCCUGGCCcuCUuuGGGCUcGGCUGGa- -3' miRNA: 3'- -GGACCGGc-GGuuCCCGGaCCGGCCgu -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 113 | 0.66 | 0.276538 |
Target: 5'- aCCUGGaCGCCGccGGC---GCCGGCAa -3' miRNA: 3'- -GGACCgGCGGUucCCGgacCGGCCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 52905 | 0.66 | 0.276538 |
Target: 5'- --cGGcCCGCUcguuGAGGGCCUGaGCCauGGUg -3' miRNA: 3'- ggaCC-GGCGG----UUCCCGGAC-CGG--CCGu -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 5576 | 0.67 | 0.257508 |
Target: 5'- gCCUGGCagaacucggGCCGGGaGGUgCUGGCUGGgGa -3' miRNA: 3'- -GGACCGg--------CGGUUC-CCG-GACCGGCCgU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 38418 | 0.67 | 0.239562 |
Target: 5'- aCCUGG-CGCacaGAGGcccgcaguugcGCCUugccGGCCGGCGa -3' miRNA: 3'- -GGACCgGCGg--UUCC-----------CGGA----CCGGCCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 36122 | 0.67 | 0.233817 |
Target: 5'- --cGuGCCGCCGAccauaGGUCUGGCCacGGCAu -3' miRNA: 3'- ggaC-CGGCGGUUc----CCGGACCGG--CCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 31345 | 0.67 | 0.233817 |
Target: 5'- aCUGGCCGCCGAGcGGgaUGGUCuuguacugGGCc -3' miRNA: 3'- gGACCGGCGGUUC-CCggACCGG--------CCGu -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 38492 | 0.67 | 0.233817 |
Target: 5'- aCUGGUCGcCCAGGGcGCCgaaggcgucGCCGuGCAg -3' miRNA: 3'- gGACCGGC-GGUUCC-CGGac-------CGGC-CGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 2198 | 0.67 | 0.221584 |
Target: 5'- aCCUGcGCCGCCAGGuguuggagaaaauGGCCgcccagcgcaaccUGGCCGcCAu -3' miRNA: 3'- -GGAC-CGGCGGUUC-------------CCGG-------------ACCGGCcGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 52350 | 0.68 | 0.21942 |
Target: 5'- gCUGcGCUGCCcggcGGGCCUGGauuuccugcugcgccUCGGCGa -3' miRNA: 3'- gGAC-CGGCGGuu--CCCGGACC---------------GGCCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 13002 | 0.68 | 0.215675 |
Target: 5'- gCCUGGCCaCCGAGGaCUUGcucgucgucgaccaGCCGGCc -3' miRNA: 3'- -GGACCGGcGGUUCCcGGAC--------------CGGCCGu -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 29831 | 0.68 | 0.210941 |
Target: 5'- gCUuGCCGCCc-GGGauauccgagagaCUGGCCGGCGg -3' miRNA: 3'- gGAcCGGCGGuuCCCg-----------GACCGGCCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 2610 | 0.68 | 0.206808 |
Target: 5'- uCCUGGCuCGaCAAGGGCgCcGaGCgCGGCAc -3' miRNA: 3'- -GGACCG-GCgGUUCCCG-GaC-CG-GCCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 52396 | 0.69 | 0.187183 |
Target: 5'- gCCUGGCggaacuCGgCGAGGGUCUgcgGGuuGGCGa -3' miRNA: 3'- -GGACCG------GCgGUUCCCGGA---CCggCCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 8040 | 0.69 | 0.164973 |
Target: 5'- aCCUGGCgGCguuccuCAAGGGgUUGaCCGGCAu -3' miRNA: 3'- -GGACCGgCG------GUUCCCgGACcGGCCGU- -5' |
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30685 | 3' | -65.3 | NC_006552.1 | + | 16030 | 0.71 | 0.11794 |
Target: 5'- cCCUccGGCUGCCcgcacugcGGcGGCCUGGuCCGGCu -3' miRNA: 3'- -GGA--CCGGCGGu-------UC-CCGGACC-GGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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