miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30685 5' -56.5 NC_006552.1 + 53260 0.66 0.712767
Target:  5'- -cUGGCGCGCCagGCucgcuaGGUcGGAGCGc -3'
miRNA:   3'- gcACUGCGCGGa-CGuag---CCA-UCUCGU- -5'
30685 5' -56.5 NC_006552.1 + 54443 0.66 0.702185
Target:  5'- --cGAUGCGCugCUGCG-CGGUgcucAGGGCAu -3'
miRNA:   3'- gcaCUGCGCG--GACGUaGCCA----UCUCGU- -5'
30685 5' -56.5 NC_006552.1 + 13056 0.66 0.69047
Target:  5'- aGUGGCGCGCCcGCGUCGuu-GAuaaaaccGCGc -3'
miRNA:   3'- gCACUGCGCGGaCGUAGCcauCU-------CGU- -5'
30685 5' -56.5 NC_006552.1 + 32502 0.66 0.670088
Target:  5'- gGUGuCGuCGCCggccggcGCGgggcCGGUGGAGCGc -3'
miRNA:   3'- gCACuGC-GCGGa------CGUa---GCCAUCUCGU- -5'
30685 5' -56.5 NC_006552.1 + 38803 0.67 0.636595
Target:  5'- gGUGacuuccaGCGCGCCgGCAUCGGUcacuuccgcgaAG-GCGa -3'
miRNA:   3'- gCAC-------UGCGCGGaCGUAGCCA-----------UCuCGU- -5'
30685 5' -56.5 NC_006552.1 + 50550 0.69 0.499668
Target:  5'- -cUGAacucCGCCUGCGUCGGUuugAGGGUAu -3'
miRNA:   3'- gcACUgc--GCGGACGUAGCCA---UCUCGU- -5'
30685 5' -56.5 NC_006552.1 + 50777 0.69 0.489518
Target:  5'- cCGUGGCGCccuGCCcgcugcugGCAUCGGUGGuGgAa -3'
miRNA:   3'- -GCACUGCG---CGGa-------CGUAGCCAUCuCgU- -5'
30685 5' -56.5 NC_006552.1 + 33355 0.72 0.36786
Target:  5'- gGUGAUGCGCC-GCAggUCGGagucGGGGCGc -3'
miRNA:   3'- gCACUGCGCGGaCGU--AGCCa---UCUCGU- -5'
30685 5' -56.5 NC_006552.1 + 20137 0.75 0.219028
Target:  5'- -cUGGCGUGCCUGCGUucCGGUGGucgGGCGa -3'
miRNA:   3'- gcACUGCGCGGACGUA--GCCAUC---UCGU- -5'
30685 5' -56.5 NC_006552.1 + 1172 1.09 0.000977
Target:  5'- uCGUGACGCGCCUGCAUCGGUAGAGCAg -3'
miRNA:   3'- -GCACUGCGCGGACGUAGCCAUCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.