Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 30686 | 5' | -56 | NC_006552.1 | + | 22335 | 0.66 | 0.675918 |
|
Target: 5'- cUGCUGGCugugCAGUUCCc-GAA-CGGCGu -3' miRNA: 3'- uACGACCG----GUCAAGGaaCUUcGCCGU- -5' |
|||||||
| 30686 | 5' | -56 | NC_006552.1 | + | 52258 | 0.67 | 0.565204 |
|
Target: 5'- -aGCUcGGCCAGcgcgcuggCCUUGGccuGGCGGUg -3' miRNA: 3'- uaCGA-CCGGUCaa------GGAACU---UCGCCGu -5' |
|||||||
| 30686 | 5' | -56 | NC_006552.1 | + | 25910 | 0.67 | 0.609333 |
|
Target: 5'- -cGCUG-CCGGcgCag-GAAGCGGCAg -3' miRNA: 3'- uaCGACcGGUCaaGgaaCUUCGCCGU- -5' |
|||||||
| 30686 | 5' | -56 | NC_006552.1 | + | 23772 | 0.68 | 0.554289 |
|
Target: 5'- -aGUUcGGCCGcgUCCguggGGAGCGGCAu -3' miRNA: 3'- uaCGA-CCGGUcaAGGaa--CUUCGCCGU- -5' |
|||||||
| 30686 | 5' | -56 | NC_006552.1 | + | 20191 | 0.74 | 0.232136 |
|
Target: 5'- cUGCUcGGCCAGggCCUgcucAGCGGCGg -3' miRNA: 3'- uACGA-CCGGUCaaGGAacu-UCGCCGU- -5' |
|||||||
| 30686 | 5' | -56 | NC_006552.1 | + | 1271 | 1.06 | 0.001146 |
|
Target: 5'- cAUGCUGGCCAGUUCCUUGAAGCGGCAu -3' miRNA: 3'- -UACGACCGGUCAAGGAACUUCGCCGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home