Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30687 | 3' | -54.5 | NC_006552.1 | + | 1074 | 0.66 | 0.784048 |
Target: 5'- aCCGcaaGCUGugccugauUCGcaacGCAGcucGCGCCGCCCu -3' miRNA: 3'- -GGU---UGACu-------AGCu---CGUCa--CGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 1657 | 1.15 | 0.000608 |
Target: 5'- aCCAACUGAUCGAGCAGUGCGCCACCCg -3' miRNA: 3'- -GGUUGACUAGCUCGUCACGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 6716 | 0.66 | 0.821834 |
Target: 5'- aCGcACUG-UCGAGCGcUGUGCUucuCCCg -3' miRNA: 3'- gGU-UGACuAGCUCGUcACGCGGu--GGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 12423 | 0.66 | 0.830818 |
Target: 5'- cCCcACccc-CGAGCAGauCGCCGCCCa -3' miRNA: 3'- -GGuUGacuaGCUCGUCacGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 20642 | 0.69 | 0.626128 |
Target: 5'- aCCAcCUGA-CGGGCA--GCGCCugCUg -3' miRNA: 3'- -GGUuGACUaGCUCGUcaCGCGGugGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 20751 | 0.74 | 0.366346 |
Target: 5'- aCguGCUGuUCGAGCAGcaacUGCGCUGCCg -3' miRNA: 3'- -GguUGACuAGCUCGUC----ACGCGGUGGg -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 21041 | 0.69 | 0.622867 |
Target: 5'- gUAGCUGAUCGAugguuugaagaaccGCGGcGCGCCGacggUCCa -3' miRNA: 3'- gGUUGACUAGCU--------------CGUCaCGCGGU----GGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 24607 | 0.67 | 0.733438 |
Target: 5'- aCCAcgcacGCUGGUcCGGGUcgauGGUgauGCGCuCGCCCa -3' miRNA: 3'- -GGU-----UGACUA-GCUCG----UCA---CGCG-GUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 29122 | 0.66 | 0.793752 |
Target: 5'- cCCugUUGGUCGccaccagccgaAGCGccgGCGUCACCCg -3' miRNA: 3'- -GGuuGACUAGC-----------UCGUca-CGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 29212 | 0.71 | 0.540069 |
Target: 5'- aCCAGCUucUCGuAGCcgauGGUGUGCUugCCg -3' miRNA: 3'- -GGUUGAcuAGC-UCG----UCACGCGGugGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 31433 | 0.66 | 0.821834 |
Target: 5'- gCAuuGCUG-UUGAGCAGaaCGCCGgCCg -3' miRNA: 3'- gGU--UGACuAGCUCGUCacGCGGUgGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 32925 | 0.69 | 0.658722 |
Target: 5'- gCAACUGGUagacGGCAGUuccgGCGaCCACCUc -3' miRNA: 3'- gGUUGACUAgc--UCGUCA----CGC-GGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 33510 | 0.68 | 0.722974 |
Target: 5'- gUCGGCcgaGAUCu-GCAGgcGCGCCACCUg -3' miRNA: 3'- -GGUUGa--CUAGcuCGUCa-CGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 34753 | 0.67 | 0.740704 |
Target: 5'- gCAGUUGAUCGAGUAGUaccggcuaacuccuGCGaUCGCCUg -3' miRNA: 3'- gGUUGACUAGCUCGUCA--------------CGC-GGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 39726 | 0.7 | 0.593579 |
Target: 5'- cCCAGCgcgauGUUGAGgAuGUGCGCCagGCCCu -3' miRNA: 3'- -GGUUGac---UAGCUCgU-CACGCGG--UGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 44515 | 0.68 | 0.701793 |
Target: 5'- gCCuGCUcGAUgGgcgccGGCAGUccuGUGCCGCCCg -3' miRNA: 3'- -GGuUGA-CUAgC-----UCGUCA---CGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 45268 | 0.67 | 0.732396 |
Target: 5'- gCCAACcccugaaUGGUCGAagcGUAG-GCGCgGCCUg -3' miRNA: 3'- -GGUUG-------ACUAGCU---CGUCaCGCGgUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 46576 | 0.69 | 0.637 |
Target: 5'- aCCAGCcgcuuugGGUCGAGCAGggccCGUUACCg -3' miRNA: 3'- -GGUUGa------CUAGCUCGUCac--GCGGUGGg -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 48848 | 0.68 | 0.701793 |
Target: 5'- gCCGGCUGAcCGccauGCAGaacCGCCGCCg -3' miRNA: 3'- -GGUUGACUaGCu---CGUCac-GCGGUGGg -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 49190 | 0.74 | 0.35787 |
Target: 5'- aCCAACUGGUC-AGU--UGCGCCACUg -3' miRNA: 3'- -GGUUGACUAGcUCGucACGCGGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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