miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 65188 0.66 0.753408
Target:  5'- -gGGGCAGCcugcUCCaACCGaucaagauaAUCAGCCCa -3'
miRNA:   3'- aaCCUGUUGu---AGG-UGGUg--------UGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 63246 0.71 0.473047
Target:  5'- gUGGACGacgaggGCAUCUACCACggACCuGCaCCc -3'
miRNA:   3'- aACCUGU------UGUAGGUGGUG--UGGuCG-GG- -5'
30687 5' -54.7 NC_006552.1 + 61760 0.69 0.601084
Target:  5'- -gGGGCAcacCAUguucCCGCCuacgaacucgcACGCCGGCCCa -3'
miRNA:   3'- aaCCUGUu--GUA----GGUGG-----------UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 60461 0.7 0.546484
Target:  5'- -cGaGGCGGCGUCUcCUGCACCAGCUUc -3'
miRNA:   3'- aaC-CUGUUGUAGGuGGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 60159 0.67 0.693661
Target:  5'- cUGGuACAggugccgauagguaaGCGUgcuggCCACCAgGCCAGCCa -3'
miRNA:   3'- aACC-UGU---------------UGUA-----GGUGGUgUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 59443 0.68 0.656337
Target:  5'- --uGACGGCGaCCAgCACGCCgaucAGCCCc -3'
miRNA:   3'- aacCUGUUGUaGGUgGUGUGG----UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 57943 0.68 0.623172
Target:  5'- cUGGugGACcUCCugCggggACACCAcCCCa -3'
miRNA:   3'- aACCugUUGuAGGugG----UGUGGUcGGG- -5'
30687 5' -54.7 NC_006552.1 + 55716 0.75 0.26074
Target:  5'- aUGGGCgAGCAUCCACUgucGCACCAcaCCCa -3'
miRNA:   3'- aACCUG-UUGUAGGUGG---UGUGGUc-GGG- -5'
30687 5' -54.7 NC_006552.1 + 55679 0.68 0.656337
Target:  5'- cUGcGCAGCAggUCACCcacGCGCCGGCCa -3'
miRNA:   3'- aACcUGUUGUa-GGUGG---UGUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 55284 0.69 0.568175
Target:  5'- cUGGAUAGCAUCggucagCGCCuuGCCGGUCUu -3'
miRNA:   3'- aACCUGUUGUAG------GUGGugUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 54912 0.72 0.423754
Target:  5'- --cGACGAUAggUCGCCGCACCAGUCUu -3'
miRNA:   3'- aacCUGUUGUa-GGUGGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 53932 0.66 0.763725
Target:  5'- -cGGAUcGCGUCgGCCAauaUGGCCCa -3'
miRNA:   3'- aaCCUGuUGUAGgUGGUgugGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 53630 0.73 0.35168
Target:  5'- -cGGugAuCuugcugCCACUGCGCCGGCCCa -3'
miRNA:   3'- aaCCugUuGua----GGUGGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 53366 0.66 0.753408
Target:  5'- -cGGACAGaagauUCUGCUugGcCCAGUCCg -3'
miRNA:   3'- aaCCUGUUgu---AGGUGGugU-GGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 53211 0.7 0.535737
Target:  5'- -aGGugGAguaGUCCACCGucucggcgucCACCGGCUCg -3'
miRNA:   3'- aaCCugUUg--UAGGUGGU----------GUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 52966 0.66 0.773904
Target:  5'- -cGGGCGGcCAUCCGCgCACGgC-GCUCg -3'
miRNA:   3'- aaCCUGUU-GUAGGUG-GUGUgGuCGGG- -5'
30687 5' -54.7 NC_006552.1 + 51622 0.72 0.433369
Target:  5'- -aGGACAGaAUCCugCGCAUCAGgCUg -3'
miRNA:   3'- aaCCUGUUgUAGGugGUGUGGUCgGG- -5'
30687 5' -54.7 NC_006552.1 + 49664 0.66 0.732413
Target:  5'- cUGGAUGuCGUCCugCACGCCgauuggcgucggGGCUUg -3'
miRNA:   3'- aACCUGUuGUAGGugGUGUGG------------UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 48850 0.7 0.546484
Target:  5'- -cGGcCGGCugaCCGCCAugcagaaccgcCGCCGGCCCg -3'
miRNA:   3'- aaCCuGUUGua-GGUGGU-----------GUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 43299 0.67 0.711012
Target:  5'- aUGGAUgcccCGUCCACCagcaGCGCCugcacGGCCUg -3'
miRNA:   3'- aACCUGuu--GUAGGUGG----UGUGG-----UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.