miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30688 3' -56.5 NC_006552.1 + 4639 0.66 0.658368
Target:  5'- cGCCGGCGAcucgccgcaggcaUGUcccucgaGGAcGCGCUGCu- -3'
miRNA:   3'- aCGGCUGCU-------------ACAag-----CCU-CGCGACGuu -5'
30688 3' -56.5 NC_006552.1 + 49569 0.67 0.582921
Target:  5'- gGCCaGCGgcGUUCuGGuGGCGCUGCu- -3'
miRNA:   3'- aCGGcUGCuaCAAG-CC-UCGCGACGuu -5'
30688 3' -56.5 NC_006552.1 + 46320 0.67 0.593804
Target:  5'- cGCUGACGGUGcacagCGaGAGCcuGCUGCu- -3'
miRNA:   3'- aCGGCUGCUACaa---GC-CUCG--CGACGuu -5'
30688 3' -56.5 NC_006552.1 + 49647 0.67 0.615659
Target:  5'- cGCCGAU--UGgcgUCGGGGCuuGCUGCu- -3'
miRNA:   3'- aCGGCUGcuACa--AGCCUCG--CGACGuu -5'
30688 3' -56.5 NC_006552.1 + 556 0.68 0.518745
Target:  5'- gGCCGACGcUGUUCGccGCGCcGCc- -3'
miRNA:   3'- aCGGCUGCuACAAGCcuCGCGaCGuu -5'
30688 3' -56.5 NC_006552.1 + 41941 0.69 0.47653
Target:  5'- cGCCGACGcaccaaaGUGUcggCGGAGUGgaGUAAg -3'
miRNA:   3'- aCGGCUGC-------UACAa--GCCUCGCgaCGUU- -5'
30688 3' -56.5 NC_006552.1 + 32490 0.7 0.428432
Target:  5'- gGCCGGCGcgGggccggUGGAGCGCU-CGAa -3'
miRNA:   3'- aCGGCUGCuaCaa----GCCUCGCGAcGUU- -5'
30688 3' -56.5 NC_006552.1 + 2022 1.06 0.001246
Target:  5'- cUGCCGACGAUGUUCGGAGCGCUGCAAg -3'
miRNA:   3'- -ACGGCUGCUACAAGCCUCGCGACGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.