Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30689 | 3' | -56.3 | NC_006552.1 | + | 24019 | 0.66 | 0.725505 |
Target: 5'- cGCAUGguccaGCCAcaugaucgcgaucaGCGUCGUaaaGCCGAGcuGACg -3' miRNA: 3'- -CGUAC-----CGGU--------------UGCGGCAg--CGGCUC--UUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 4653 | 0.69 | 0.505367 |
Target: 5'- ---cGGCCAGCaCCGuUCGCCGGcGACu -3' miRNA: 3'- cguaCCGGUUGcGGC-AGCGGCUcUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 15787 | 0.69 | 0.515636 |
Target: 5'- cGCAgucaGGCCuACGCCuggcUCGCCGcuGAACu -3' miRNA: 3'- -CGUa---CCGGuUGCGGc---AGCGGCu-CUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 55278 | 0.69 | 0.536417 |
Target: 5'- aGCAUcGGUCAGCGCC-UUGCCGGu--- -3' miRNA: 3'- -CGUA-CCGGUUGCGGcAGCGGCUcuug -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 32491 | 0.68 | 0.568105 |
Target: 5'- ---cGGCCGGCGCgGg-GCCGguGGAGCg -3' miRNA: 3'- cguaCCGGUUGCGgCagCGGC--UCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 1714 | 0.68 | 0.568105 |
Target: 5'- cGCu--GCCGGcCGCCGgCGCCG-GAGCa -3' miRNA: 3'- -CGuacCGGUU-GCGGCaGCGGCuCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 7008 | 0.68 | 0.578777 |
Target: 5'- cGCAagaaggcccUGGCCGaagccACGCUG-CGCCGGGuGGCu -3' miRNA: 3'- -CGU---------ACCGGU-----UGCGGCaGCGGCUC-UUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 38912 | 0.68 | 0.600242 |
Target: 5'- cCGUGGCC-GCGCCcagcggguaGUCGCCGGccAACa -3' miRNA: 3'- cGUACCGGuUGCGG---------CAGCGGCUc-UUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 55818 | 0.68 | 0.611017 |
Target: 5'- uGCcUGGCCAcugccGCGCaCGUCGCCccguGCg -3' miRNA: 3'- -CGuACCGGU-----UGCG-GCAGCGGcucuUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 561 | 0.69 | 0.495187 |
Target: 5'- gGUAcGGCCGACGCUGuUCGCCGc---- -3' miRNA: 3'- -CGUaCCGGUUGCGGC-AGCGGCucuug -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 17540 | 0.71 | 0.414743 |
Target: 5'- aGCGUGGCCG--GCUGUCGggaucucaggucccCCGAGAAa -3' miRNA: 3'- -CGUACCGGUugCGGCAGC--------------GGCUCUUg -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 16614 | 0.71 | 0.408329 |
Target: 5'- uGCAcauUGG-CGACGacaucaccgugaCCGUCGUCGAGAACa -3' miRNA: 3'- -CGU---ACCgGUUGC------------GGCAGCGGCUCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 2234 | 0.78 | 0.157962 |
Target: 5'- cGCAcgaacUGGCCGGCGCCGUucuucUGCCGGcGGACc -3' miRNA: 3'- -CGU-----ACCGGUUGCGGCA-----GCGGCU-CUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 61619 | 0.74 | 0.286679 |
Target: 5'- uGC-UGGCCGAgcCGCCGgCGCCGgcAGGACu -3' miRNA: 3'- -CGuACCGGUU--GCGGCaGCGGC--UCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 43145 | 0.74 | 0.286679 |
Target: 5'- gGCcUGGCCAGUGCUGUCGCUGAu-GCg -3' miRNA: 3'- -CGuACCGGUUGCGGCAGCGGCUcuUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 14164 | 0.73 | 0.316092 |
Target: 5'- cGCcUGGCCGAUGCCGgCGaucCCGAGAc- -3' miRNA: 3'- -CGuACCGGUUGCGGCaGC---GGCUCUug -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 41373 | 0.73 | 0.339609 |
Target: 5'- -gAUGGCCAacucACGCgCGcCGCCGGcGGACa -3' miRNA: 3'- cgUACCGGU----UGCG-GCaGCGGCU-CUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 33171 | 0.72 | 0.381555 |
Target: 5'- ---cGGCCAGCGCCauGUCaGCCaGGGGCg -3' miRNA: 3'- cguaCCGGUUGCGG--CAG-CGGcUCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 32315 | 0.71 | 0.405599 |
Target: 5'- aGCAUGGgC-ACGCCGUCGCuCGccaucugcgccaccAGGGCc -3' miRNA: 3'- -CGUACCgGuUGCGGCAGCG-GC--------------UCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 47292 | 0.71 | 0.408329 |
Target: 5'- gGCcUGGCgAACGCUaUCGgcCCGAGAGCu -3' miRNA: 3'- -CGuACCGgUUGCGGcAGC--GGCUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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