miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30689 3' -56.3 NC_006552.1 + 24019 0.66 0.725505
Target:  5'- cGCAUGguccaGCCAcaugaucgcgaucaGCGUCGUaaaGCCGAGcuGACg -3'
miRNA:   3'- -CGUAC-----CGGU--------------UGCGGCAg--CGGCUC--UUG- -5'
30689 3' -56.3 NC_006552.1 + 4653 0.69 0.505367
Target:  5'- ---cGGCCAGCaCCGuUCGCCGGcGACu -3'
miRNA:   3'- cguaCCGGUUGcGGC-AGCGGCUcUUG- -5'
30689 3' -56.3 NC_006552.1 + 15787 0.69 0.515636
Target:  5'- cGCAgucaGGCCuACGCCuggcUCGCCGcuGAACu -3'
miRNA:   3'- -CGUa---CCGGuUGCGGc---AGCGGCu-CUUG- -5'
30689 3' -56.3 NC_006552.1 + 55278 0.69 0.536417
Target:  5'- aGCAUcGGUCAGCGCC-UUGCCGGu--- -3'
miRNA:   3'- -CGUA-CCGGUUGCGGcAGCGGCUcuug -5'
30689 3' -56.3 NC_006552.1 + 32491 0.68 0.568105
Target:  5'- ---cGGCCGGCGCgGg-GCCGguGGAGCg -3'
miRNA:   3'- cguaCCGGUUGCGgCagCGGC--UCUUG- -5'
30689 3' -56.3 NC_006552.1 + 1714 0.68 0.568105
Target:  5'- cGCu--GCCGGcCGCCGgCGCCG-GAGCa -3'
miRNA:   3'- -CGuacCGGUU-GCGGCaGCGGCuCUUG- -5'
30689 3' -56.3 NC_006552.1 + 7008 0.68 0.578777
Target:  5'- cGCAagaaggcccUGGCCGaagccACGCUG-CGCCGGGuGGCu -3'
miRNA:   3'- -CGU---------ACCGGU-----UGCGGCaGCGGCUC-UUG- -5'
30689 3' -56.3 NC_006552.1 + 38912 0.68 0.600242
Target:  5'- cCGUGGCC-GCGCCcagcggguaGUCGCCGGccAACa -3'
miRNA:   3'- cGUACCGGuUGCGG---------CAGCGGCUc-UUG- -5'
30689 3' -56.3 NC_006552.1 + 55818 0.68 0.611017
Target:  5'- uGCcUGGCCAcugccGCGCaCGUCGCCccguGCg -3'
miRNA:   3'- -CGuACCGGU-----UGCG-GCAGCGGcucuUG- -5'
30689 3' -56.3 NC_006552.1 + 561 0.69 0.495187
Target:  5'- gGUAcGGCCGACGCUGuUCGCCGc---- -3'
miRNA:   3'- -CGUaCCGGUUGCGGC-AGCGGCucuug -5'
30689 3' -56.3 NC_006552.1 + 17540 0.71 0.414743
Target:  5'- aGCGUGGCCG--GCUGUCGggaucucaggucccCCGAGAAa -3'
miRNA:   3'- -CGUACCGGUugCGGCAGC--------------GGCUCUUg -5'
30689 3' -56.3 NC_006552.1 + 16614 0.71 0.408329
Target:  5'- uGCAcauUGG-CGACGacaucaccgugaCCGUCGUCGAGAACa -3'
miRNA:   3'- -CGU---ACCgGUUGC------------GGCAGCGGCUCUUG- -5'
30689 3' -56.3 NC_006552.1 + 2234 0.78 0.157962
Target:  5'- cGCAcgaacUGGCCGGCGCCGUucuucUGCCGGcGGACc -3'
miRNA:   3'- -CGU-----ACCGGUUGCGGCA-----GCGGCU-CUUG- -5'
30689 3' -56.3 NC_006552.1 + 61619 0.74 0.286679
Target:  5'- uGC-UGGCCGAgcCGCCGgCGCCGgcAGGACu -3'
miRNA:   3'- -CGuACCGGUU--GCGGCaGCGGC--UCUUG- -5'
30689 3' -56.3 NC_006552.1 + 43145 0.74 0.286679
Target:  5'- gGCcUGGCCAGUGCUGUCGCUGAu-GCg -3'
miRNA:   3'- -CGuACCGGUUGCGGCAGCGGCUcuUG- -5'
30689 3' -56.3 NC_006552.1 + 14164 0.73 0.316092
Target:  5'- cGCcUGGCCGAUGCCGgCGaucCCGAGAc- -3'
miRNA:   3'- -CGuACCGGUUGCGGCaGC---GGCUCUug -5'
30689 3' -56.3 NC_006552.1 + 41373 0.73 0.339609
Target:  5'- -gAUGGCCAacucACGCgCGcCGCCGGcGGACa -3'
miRNA:   3'- cgUACCGGU----UGCG-GCaGCGGCU-CUUG- -5'
30689 3' -56.3 NC_006552.1 + 33171 0.72 0.381555
Target:  5'- ---cGGCCAGCGCCauGUCaGCCaGGGGCg -3'
miRNA:   3'- cguaCCGGUUGCGG--CAG-CGGcUCUUG- -5'
30689 3' -56.3 NC_006552.1 + 32315 0.71 0.405599
Target:  5'- aGCAUGGgC-ACGCCGUCGCuCGccaucugcgccaccAGGGCc -3'
miRNA:   3'- -CGUACCgGuUGCGGCAGCG-GC--------------UCUUG- -5'
30689 3' -56.3 NC_006552.1 + 47292 0.71 0.408329
Target:  5'- gGCcUGGCgAACGCUaUCGgcCCGAGAGCu -3'
miRNA:   3'- -CGuACCGgUUGCGGcAGC--GGCUCUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.