Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30689 | 3' | -56.3 | NC_006552.1 | + | 11195 | 0.67 | 0.621811 |
Target: 5'- cGCGUGGCCcugGCCcUgGCCGcGAGCc -3' miRNA: 3'- -CGUACCGGuugCGGcAgCGGCuCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 1438 | 0.67 | 0.621811 |
Target: 5'- aCAUGaccgccGCCAauauGCGCCagGUCGCCGcGGACg -3' miRNA: 3'- cGUAC------CGGU----UGCGG--CAGCGGCuCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 12255 | 0.67 | 0.664978 |
Target: 5'- cGCcUGcGCCGGCGcCCGcCGCCGGu-GCg -3' miRNA: 3'- -CGuAC-CGGUUGC-GGCaGCGGCUcuUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 24055 | 0.67 | 0.664978 |
Target: 5'- cGCgAUGauGCCGcaGCGCUgGUCGCCGuuGAACa -3' miRNA: 3'- -CG-UAC--CGGU--UGCGG-CAGCGGCu-CUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 52298 | 0.67 | 0.664978 |
Target: 5'- gGCGUGcGCCuuGAUGUCGUCGUCGGu--- -3' miRNA: 3'- -CGUAC-CGG--UUGCGGCAGCGGCUcuug -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 40472 | 0.66 | 0.675721 |
Target: 5'- cGUA-GGCCAccaGCCGgCGCCGGGccuGCu -3' miRNA: 3'- -CGUaCCGGUug-CGGCaGCGGCUCu--UG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 32455 | 0.66 | 0.686423 |
Target: 5'- cGCgAUGGUUGaggaaucgacGCGCCagGUCGCCGGGcACg -3' miRNA: 3'- -CG-UACCGGU----------UGCGG--CAGCGGCUCuUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 27034 | 0.66 | 0.697076 |
Target: 5'- uGC-UGGCCGcgguaGCUGUuggUGCUGGGAACg -3' miRNA: 3'- -CGuACCGGUug---CGGCA---GCGGCUCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 6589 | 0.66 | 0.707668 |
Target: 5'- -gAUGGUgGGCGUCGguggccgCGCCGGGcaGACu -3' miRNA: 3'- cgUACCGgUUGCGGCa------GCGGCUC--UUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 24212 | 0.66 | 0.71714 |
Target: 5'- aCGUGGCCAcgcgcacACuGCUGUUGuuGuGGGCg -3' miRNA: 3'- cGUACCGGU-------UG-CGGCAGCggCuCUUG- -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 34634 | 0.66 | 0.718189 |
Target: 5'- ---cGGCCc-CGCCGguccacagCGCCGGGAu- -3' miRNA: 3'- cguaCCGGuuGCGGCa-------GCGGCUCUug -5' |
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30689 | 3' | -56.3 | NC_006552.1 | + | 24019 | 0.66 | 0.725505 |
Target: 5'- cGCAUGguccaGCCAcaugaucgcgaucaGCGUCGUaaaGCCGAGcuGACg -3' miRNA: 3'- -CGUAC-----CGGU--------------UGCGGCAg--CGGCUC--UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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