miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30689 5' -54.7 NC_006552.1 + 2073 1.09 0.001403
Target:  5'- uUGAUCCUCAUCGAGCGCGGCGAACACc -3'
miRNA:   3'- -ACUAGGAGUAGCUCGCGCCGCUUGUG- -5'
30689 5' -54.7 NC_006552.1 + 12807 0.76 0.264628
Target:  5'- cGcgCCUCAUUGGGCGCaGGCaguggucacuaccGAGCACg -3'
miRNA:   3'- aCuaGGAGUAGCUCGCG-CCG-------------CUUGUG- -5'
30689 5' -54.7 NC_006552.1 + 40146 0.74 0.339024
Target:  5'- -cGUCUUCcgCGAaacgaccguagggGCGCGGCGAAUACa -3'
miRNA:   3'- acUAGGAGuaGCU-------------CGCGCCGCUUGUG- -5'
30689 5' -54.7 NC_006552.1 + 21660 0.73 0.377137
Target:  5'- --cUCCUCGUCucGCGCGGCGucccgaacagcuuucGACGCg -3'
miRNA:   3'- acuAGGAGUAGcuCGCGCCGC---------------UUGUG- -5'
30689 5' -54.7 NC_006552.1 + 16645 0.71 0.47754
Target:  5'- cUGAUCCUCAcucgcCGAGU-CGGCGAaacccuGCACa -3'
miRNA:   3'- -ACUAGGAGUa----GCUCGcGCCGCU------UGUG- -5'
30689 5' -54.7 NC_006552.1 + 8389 0.7 0.572078
Target:  5'- gGAUCCgc-UCGAGCGCgcccGGCGGAUg- -3'
miRNA:   3'- aCUAGGaguAGCUCGCG----CCGCUUGug -5'
30689 5' -54.7 NC_006552.1 + 53769 0.67 0.713561
Target:  5'- uUGAU-CUUAUCcGGCuCGGCGGGCGCc -3'
miRNA:   3'- -ACUAgGAGUAGcUCGcGCCGCUUGUG- -5'
30689 5' -54.7 NC_006552.1 + 880 0.66 0.759567
Target:  5'- cUGGUCCUCAUCaaGAGCGaCgaccaggaagaugacGGUGAGC-Cg -3'
miRNA:   3'- -ACUAGGAGUAG--CUCGC-G---------------CCGCUUGuG- -5'
30689 5' -54.7 NC_006552.1 + 31508 0.66 0.765669
Target:  5'- aGGUCUUCGgcgaCGaAGC-CGGCGGGCAa -3'
miRNA:   3'- aCUAGGAGUa---GC-UCGcGCCGCUUGUg -5'
30689 5' -54.7 NC_006552.1 + 8343 0.66 0.795391
Target:  5'- gGAUUCggCAgcgcCGcGGCgaGCGGCGAACGCa -3'
miRNA:   3'- aCUAGGa-GUa---GC-UCG--CGCCGCUUGUG- -5'
30689 5' -54.7 NC_006552.1 + 2613 0.66 0.795391
Target:  5'- cGAUCCUgGcUCGAcaaGgGCGcCGAGCGCg -3'
miRNA:   3'- aCUAGGAgU-AGCU---CgCGCcGCUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.