miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30690 3' -60 NC_006552.1 + 61624 0.71 0.250211
Target:  5'- cCAGGUGCUGGcCGAGccgccGGCG-CCGGCa -3'
miRNA:   3'- -GUCCGCGACCuGUUC-----UCGCgGGUCGg -5'
30690 3' -60 NC_006552.1 + 43609 0.72 0.226253
Target:  5'- aUAGGCGCUaugcGGAUGcaccAGcGCGCCCuGGCCg -3'
miRNA:   3'- -GUCCGCGA----CCUGU----UCuCGCGGG-UCGG- -5'
30690 3' -60 NC_006552.1 + 47551 0.72 0.206379
Target:  5'- cCAGGCGCUGGcgaucgaguucguugGCGgcgaGGAagcgcGCGCCCuGCCc -3'
miRNA:   3'- -GUCCGCGACC---------------UGU----UCU-----CGCGGGuCGG- -5'
30690 3' -60 NC_006552.1 + 2188 0.72 0.204267
Target:  5'- cCAGGUGUUGGAgAAaauGGcCGCCCAGCg -3'
miRNA:   3'- -GUCCGCGACCUgUUc--UC-GCGGGUCGg -5'
30690 3' -60 NC_006552.1 + 14184 0.73 0.193984
Target:  5'- aAGGCcugaaGCUGa--AAGAGCGCCUGGCCg -3'
miRNA:   3'- gUCCG-----CGACcugUUCUCGCGGGUCGG- -5'
30690 3' -60 NC_006552.1 + 4054 0.74 0.165816
Target:  5'- gCAGGCGUUGG-CAgagGGAGUGCgCGGCg -3'
miRNA:   3'- -GUCCGCGACCuGU---UCUCGCGgGUCGg -5'
30690 3' -60 NC_006552.1 + 11078 0.76 0.107873
Target:  5'- gCAGGCuCUGGcGCAucgucuGAGCGCCgGGCCg -3'
miRNA:   3'- -GUCCGcGACC-UGUu-----CUCGCGGgUCGG- -5'
30690 3' -60 NC_006552.1 + 2512 1.1 0.000341
Target:  5'- gCAGGCGCUGGACAAGAGCGCCCAGCCc -3'
miRNA:   3'- -GUCCGCGACCUGUUCUCGCGGGUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.