miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30690 5' -54.4 NC_006552.1 + 12211 0.66 0.77032
Target:  5'- uUCAUC-GAGCgcgCAGCCugAUGCCCAACc- -3'
miRNA:   3'- -AGUGGaCUCG---GUUGG--UACGGGUUGau -5'
30690 5' -54.4 NC_006552.1 + 16283 0.66 0.764136
Target:  5'- --uCCUGAGCCcguuucaucccccCCuUGCCCGGCUAc -3'
miRNA:   3'- aguGGACUCGGuu-----------GGuACGGGUUGAU- -5'
30690 5' -54.4 NC_006552.1 + 49213 0.66 0.749516
Target:  5'- cCugCUGgAGCgCGGCCugcUGCaCCAACUGg -3'
miRNA:   3'- aGugGAC-UCG-GUUGGu--ACG-GGUUGAU- -5'
30690 5' -54.4 NC_006552.1 + 62043 0.66 0.748462
Target:  5'- aCGCCUGAGCCGAcggcgauCCAUccaUCCGGCg- -3'
miRNA:   3'- aGUGGACUCGGUU-------GGUAc--GGGUUGau -5'
30690 5' -54.4 NC_006552.1 + 51283 0.66 0.728219
Target:  5'- cCugCUGAGCaucgGugCGUGCCaCGACa- -3'
miRNA:   3'- aGugGACUCGg---UugGUACGG-GUUGau -5'
30690 5' -54.4 NC_006552.1 + 3350 0.67 0.717417
Target:  5'- gCACCaGGGCCAGCUccGCCUGAg-- -3'
miRNA:   3'- aGUGGaCUCGGUUGGuaCGGGUUgau -5'
30690 5' -54.4 NC_006552.1 + 19339 0.67 0.706528
Target:  5'- aUCACCUGcgGGCgucugAACCAggcgcGCCCAACUc -3'
miRNA:   3'- -AGUGGAC--UCGg----UUGGUa----CGGGUUGAu -5'
30690 5' -54.4 NC_006552.1 + 37838 0.68 0.662337
Target:  5'- cCACCcGGGCCAggagccggcagACCAgcagGCCgAACUGu -3'
miRNA:   3'- aGUGGaCUCGGU-----------UGGUa---CGGgUUGAU- -5'
30690 5' -54.4 NC_006552.1 + 29359 0.68 0.662337
Target:  5'- -aGCCUGAGCCGccGCCAguugguUGUCCuGCg- -3'
miRNA:   3'- agUGGACUCGGU--UGGU------ACGGGuUGau -5'
30690 5' -54.4 NC_006552.1 + 31039 0.68 0.606519
Target:  5'- gCGCCaGAGCCuGGCC--GCCCAGCa- -3'
miRNA:   3'- aGUGGaCUCGG-UUGGuaCGGGUUGau -5'
30690 5' -54.4 NC_006552.1 + 18090 0.69 0.584281
Target:  5'- cCGCCUG-GCCAGCCccGUCCGGg-- -3'
miRNA:   3'- aGUGGACuCGGUUGGuaCGGGUUgau -5'
30690 5' -54.4 NC_006552.1 + 10100 0.69 0.584281
Target:  5'- cUCACCaacauagGAGgCAGCCAUGCCUAu--- -3'
miRNA:   3'- -AGUGGa------CUCgGUUGGUACGGGUugau -5'
30690 5' -54.4 NC_006552.1 + 53551 0.69 0.573219
Target:  5'- gUCGCCgucGCCcuGCCAgagGCCCAGCUu -3'
miRNA:   3'- -AGUGGacuCGGu-UGGUa--CGGGUUGAu -5'
30690 5' -54.4 NC_006552.1 + 16689 0.71 0.476811
Target:  5'- -gGCCUGAGCCcGCgc-GCCCAGCa- -3'
miRNA:   3'- agUGGACUCGGuUGguaCGGGUUGau -5'
30690 5' -54.4 NC_006552.1 + 7112 0.71 0.446442
Target:  5'- -gGCCUGAGCCGACCcacGCCaAGCa- -3'
miRNA:   3'- agUGGACUCGGUUGGua-CGGgUUGau -5'
30690 5' -54.4 NC_006552.1 + 2478 1.07 0.001582
Target:  5'- uUCACCUGAGCCAACCAUGCCCAACUAc -3'
miRNA:   3'- -AGUGGACUCGGUUGGUACGGGUUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.