miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30691 3' -52.2 NC_006552.1 + 2820 1.09 0.002346
Target:  5'- aGUGGACCGCAACUGUUCGACUGGAACc -3'
miRNA:   3'- -CACCUGGCGUUGACAAGCUGACCUUG- -5'
30691 3' -52.2 NC_006552.1 + 29767 0.69 0.718501
Target:  5'- cUGGGCCGCAGCcuucgcgucuugcgcGUUCGGCUGcuGCu -3'
miRNA:   3'- cACCUGGCGUUGa--------------CAAGCUGACcuUG- -5'
30691 3' -52.2 NC_006552.1 + 37448 0.69 0.748462
Target:  5'- aUGGugUGCGGCgugagacgcggcuUGgaUGGCUGGAACa -3'
miRNA:   3'- cACCugGCGUUG-------------ACaaGCUGACCUUG- -5'
30691 3' -52.2 NC_006552.1 + 7067 0.68 0.780507
Target:  5'- aGUGGAagaCCGCAgccgACUGcaUCGACUGGucguACc -3'
miRNA:   3'- -CACCU---GGCGU----UGACa-AGCUGACCu---UG- -5'
30691 3' -52.2 NC_006552.1 + 15574 0.68 0.800396
Target:  5'- -gGGACCGCGAag--UCGAuccgcuCUGGGACc -3'
miRNA:   3'- caCCUGGCGUUgacaAGCU------GACCUUG- -5'
30691 3' -52.2 NC_006552.1 + 27032 0.67 0.846756
Target:  5'- cUGG-CCGCGguaGCUGUUgGuGCUGGGAa -3'
miRNA:   3'- cACCuGGCGU---UGACAAgC-UGACCUUg -5'
30691 3' -52.2 NC_006552.1 + 3576 0.67 0.85537
Target:  5'- -gGGACgGCAACUGccUGAuCUGGAu- -3'
miRNA:   3'- caCCUGgCGUUGACaaGCU-GACCUug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.