miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30693 5' -55.6 NC_006552.1 + 6658 0.66 0.725418
Target:  5'- cGAUCCcgcUGaGCCGCUGcccacugugacUGCGGCAa -3'
miRNA:   3'- uCUAGGuu-ACgCGGCGAC-----------ACGUCGUc -5'
30693 5' -55.6 NC_006552.1 + 55710 0.66 0.724352
Target:  5'- gAGcAUCCAcUGuCGCaccacacccaguaCGCUGcGCAGCAGg -3'
miRNA:   3'- -UC-UAGGUuAC-GCG-------------GCGACaCGUCGUC- -5'
30693 5' -55.6 NC_006552.1 + 12251 0.66 0.714717
Target:  5'- uGcgCCGGcGCccGCCGCcgGUGCGGCAu -3'
miRNA:   3'- uCuaGGUUaCG--CGGCGa-CACGUCGUc -5'
30693 5' -55.6 NC_006552.1 + 49184 0.66 0.714717
Target:  5'- uGGUCaguUGCGCCaCUGUccacggccugcGCAGCAGc -3'
miRNA:   3'- uCUAGguuACGCGGcGACA-----------CGUCGUC- -5'
30693 5' -55.6 NC_006552.1 + 8344 0.66 0.693082
Target:  5'- gGGAUUCGGcaGCGCCGCg--GCgAGCGGc -3'
miRNA:   3'- -UCUAGGUUa-CGCGGCGacaCG-UCGUC- -5'
30693 5' -55.6 NC_006552.1 + 38557 0.66 0.693082
Target:  5'- cAGGUCCccuuCGCCGauCUGUGCgAGCGGc -3'
miRNA:   3'- -UCUAGGuuacGCGGC--GACACG-UCGUC- -5'
30693 5' -55.6 NC_006552.1 + 50177 0.66 0.682169
Target:  5'- cGGcgCCAGUG-GCUucagcacgcgggGCUGcGCAGCAGg -3'
miRNA:   3'- -UCuaGGUUACgCGG------------CGACaCGUCGUC- -5'
30693 5' -55.6 NC_006552.1 + 42849 0.67 0.649188
Target:  5'- -cAUCCGAcacCGCCGCcguaucggUGUGCAGCAc -3'
miRNA:   3'- ucUAGGUUac-GCGGCG--------ACACGUCGUc -5'
30693 5' -55.6 NC_006552.1 + 40793 0.67 0.638148
Target:  5'- -cGUCCGGgaaGCCGCUGUaGCcgGGCAGa -3'
miRNA:   3'- ucUAGGUUacgCGGCGACA-CG--UCGUC- -5'
30693 5' -55.6 NC_006552.1 + 54444 0.67 0.627103
Target:  5'- ----gCGAUGCGCUGCUGcGCGGUg- -3'
miRNA:   3'- ucuagGUUACGCGGCGACaCGUCGuc -5'
30693 5' -55.6 NC_006552.1 + 34625 0.67 0.616063
Target:  5'- cGGUCCAcaGCGCCGggaUUG-GUAGCAGc -3'
miRNA:   3'- uCUAGGUuaCGCGGC---GACaCGUCGUC- -5'
30693 5' -55.6 NC_006552.1 + 43141 0.67 0.605036
Target:  5'- uGG-CCAGUGCuGUCGCUGaUGCGcGCGGc -3'
miRNA:   3'- uCUaGGUUACG-CGGCGAC-ACGU-CGUC- -5'
30693 5' -55.6 NC_006552.1 + 50218 0.68 0.594033
Target:  5'- cGGAUgacCCAGcuUGCGCUGUUGUcggugGCGGUAGg -3'
miRNA:   3'- -UCUA---GGUU--ACGCGGCGACA-----CGUCGUC- -5'
30693 5' -55.6 NC_006552.1 + 30823 0.69 0.539674
Target:  5'- -cGUUCGAcGCGCgCGCcaGUGCAGCAGc -3'
miRNA:   3'- ucUAGGUUaCGCG-GCGa-CACGUCGUC- -5'
30693 5' -55.6 NC_006552.1 + 25559 0.69 0.518382
Target:  5'- gGGAUgcCCAGUGC-CUGCUGgcgacGCAGCAa -3'
miRNA:   3'- -UCUA--GGUUACGcGGCGACa----CGUCGUc -5'
30693 5' -55.6 NC_006552.1 + 38480 0.73 0.29171
Target:  5'- gGGcgCCGAagGCGUCGCcGUGCAGUGGg -3'
miRNA:   3'- -UCuaGGUUa-CGCGGCGaCACGUCGUC- -5'
30693 5' -55.6 NC_006552.1 + 3226 1.08 0.001114
Target:  5'- cAGAUCCAAUGCGCCGCUGUGCAGCAGc -3'
miRNA:   3'- -UCUAGGUUACGCGGCGACACGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.