miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30694 5' -56.6 NC_006552.1 + 63156 0.67 0.581874
Target:  5'- --uGCGCCugggacAGGCgcuUGAGc-GCGCCGGCg -3'
miRNA:   3'- uguCGUGG------UCCG---ACUUaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 62308 0.66 0.673353
Target:  5'- aACAGCAUgGGuucgucaucaucaccGCcGAua-GCGCCGGCg -3'
miRNA:   3'- -UGUCGUGgUC---------------CGaCUuaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 61629 0.66 0.625399
Target:  5'- uCA-CGCCAGGUgcuggccGAGccgccgGCGCCGGCa -3'
miRNA:   3'- uGUcGUGGUCCGa------CUUaa----CGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 60069 0.66 0.647232
Target:  5'- uGCGGCACCugcacGGCgaUGcAUUGCGCauGCc -3'
miRNA:   3'- -UGUCGUGGu----CCG--ACuUAACGCGgcCG- -5'
30694 5' -56.6 NC_006552.1 + 59598 0.69 0.48704
Target:  5'- -aAGCcgGCCAGGCUGAcggucaGCG-CGGCa -3'
miRNA:   3'- ugUCG--UGGUCCGACUuaa---CGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 59511 0.71 0.356335
Target:  5'- gGCAGCGCUcucGGCUGAuucGCGgCGGUc -3'
miRNA:   3'- -UGUCGUGGu--CCGACUuaaCGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 54407 0.69 0.476927
Target:  5'- -uGGCGCCGacGGC---AUUGCGuCCGGCg -3'
miRNA:   3'- ugUCGUGGU--CCGacuUAACGC-GGCCG- -5'
30694 5' -56.6 NC_006552.1 + 54366 0.67 0.569996
Target:  5'- gGCGGUuguucGCCGGGCUGcggcgcUGCcgacucuucggcuGCCGGCu -3'
miRNA:   3'- -UGUCG-----UGGUCCGACuua---ACG-------------CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 53645 0.67 0.571074
Target:  5'- cCAGCGCCcacGGaacggugaucuuGCUGccacUGCGCCGGCc -3'
miRNA:   3'- uGUCGUGG---UC------------CGACuua-ACGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 53258 0.66 0.658134
Target:  5'- gGC-GCGCCAGGCUcgcuaggucGGA--GCGCaUGGCg -3'
miRNA:   3'- -UGuCGUGGUCCGA---------CUUaaCGCG-GCCG- -5'
30694 5' -56.6 NC_006552.1 + 51900 0.66 0.679855
Target:  5'- cGCGGgAUCGGGCuUGggU-GCcucuGCCGGUu -3'
miRNA:   3'- -UGUCgUGGUCCG-ACuuAaCG----CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 51608 0.67 0.6025
Target:  5'- --cGCAUCAGGCUGcGguccccgucuuccUUGCGCUGcGCc -3'
miRNA:   3'- uguCGUGGUCCGACuU-------------AACGCGGC-CG- -5'
30694 5' -56.6 NC_006552.1 + 50005 0.69 0.497253
Target:  5'- cACAGguCCAcGGCcuUGAug-GUGCCGGUc -3'
miRNA:   3'- -UGUCguGGU-CCG--ACUuaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 49846 0.67 0.61885
Target:  5'- uGCAGCGCCgcAGGCUGcucgagcuucuguUUG-GCCuGGCg -3'
miRNA:   3'- -UGUCGUGG--UCCGACuu-----------AACgCGG-CCG- -5'
30694 5' -56.6 NC_006552.1 + 47044 0.74 0.252315
Target:  5'- gUAGC-CCGGGCgGAuuGUUGUGCCGGa -3'
miRNA:   3'- uGUCGuGGUCCGaCU--UAACGCGGCCg -5'
30694 5' -56.6 NC_006552.1 + 46858 0.73 0.292788
Target:  5'- cGCuGCACCcuGGGCUGcuugcugaccacgaaGCGCCGGCg -3'
miRNA:   3'- -UGuCGUGG--UCCGACuuaa-----------CGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 45659 0.69 0.48704
Target:  5'- cACGuGCGCC--GCUGAcagaGCGCCGGCc -3'
miRNA:   3'- -UGU-CGUGGucCGACUuaa-CGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 44521 0.78 0.140448
Target:  5'- aACAGCGCCu-GCUcGAuggGCGCCGGCa -3'
miRNA:   3'- -UGUCGUGGucCGA-CUuaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 44066 0.7 0.437569
Target:  5'- gGCuGCucgcCCAGGUUGAcggGCGgCGGCg -3'
miRNA:   3'- -UGuCGu---GGUCCGACUuaaCGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 43148 0.73 0.279226
Target:  5'- gGCGGCcugGCCAGuGCUGucgcugaUGCGCgCGGCa -3'
miRNA:   3'- -UGUCG---UGGUC-CGACuua----ACGCG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.