miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30694 5' -56.6 NC_006552.1 + 21192 0.7 0.409307
Target:  5'- cCAGgGCCAGGC-GAAccuCGCCGGUg -3'
miRNA:   3'- uGUCgUGGUCCGaCUUaacGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 23695 0.66 0.625399
Target:  5'- gACGGCAUCagggucggaaacGGGCUGcauggUGCugcuaccacucGCCGGCa -3'
miRNA:   3'- -UGUCGUGG------------UCCGACuua--ACG-----------CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 25479 0.66 0.676606
Target:  5'- gACGGCucGCCAGGCgggcUGGuccucgauuucguaGUUGaUGUCGGCg -3'
miRNA:   3'- -UGUCG--UGGUCCG----ACU--------------UAAC-GCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 25595 0.69 0.457021
Target:  5'- aACAGCGCCGGGCcGAucagGUcuuccacuGCgGGCg -3'
miRNA:   3'- -UGUCGUGGUCCGaCUuaa-CG--------CGgCCG- -5'
30694 5' -56.6 NC_006552.1 + 26359 0.66 0.658134
Target:  5'- aACGGCACgUAGGg-GAA--GUGCCGGUg -3'
miRNA:   3'- -UGUCGUG-GUCCgaCUUaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 26951 0.69 0.466919
Target:  5'- gGCGGCGCCGGuCUGcgGAUcGCGCugCGGCu -3'
miRNA:   3'- -UGUCGUGGUCcGAC--UUAaCGCG--GCCG- -5'
30694 5' -56.6 NC_006552.1 + 29036 0.71 0.348817
Target:  5'- gGCGGCAUCGGcGCUGGccucgccagcauCGCCGGCa -3'
miRNA:   3'- -UGUCGUGGUC-CGACUuaac--------GCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 31679 0.76 0.189236
Target:  5'- aACAGCGCCuuGCUGGAacuggUGCGCaGGCg -3'
miRNA:   3'- -UGUCGUGGucCGACUUa----ACGCGgCCG- -5'
30694 5' -56.6 NC_006552.1 + 31908 0.67 0.581874
Target:  5'- -aGGCAgUAGGCgGAAUUgaucGCGUgGGCg -3'
miRNA:   3'- ugUCGUgGUCCGaCUUAA----CGCGgCCG- -5'
30694 5' -56.6 NC_006552.1 + 32004 0.72 0.331716
Target:  5'- -gGGUuguCCAGGUgGAGUUGCacGCCGGCc -3'
miRNA:   3'- ugUCGu--GGUCCGaCUUAACG--CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 32635 0.69 0.494179
Target:  5'- aGCGGUccuuggcgaaugccGCCAGGCUGGugaa-GUCGGCg -3'
miRNA:   3'- -UGUCG--------------UGGUCCGACUuaacgCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 33101 0.69 0.48704
Target:  5'- -uGGCACCAGGCgcagcGAAgUGuCGCCcuggauGGCg -3'
miRNA:   3'- ugUCGUGGUCCGa----CUUaAC-GCGG------CCG- -5'
30694 5' -56.6 NC_006552.1 + 33700 0.66 0.625399
Target:  5'- cGCAGuCugC-GGCgUGua-UGCGCCGGUa -3'
miRNA:   3'- -UGUC-GugGuCCG-ACuuaACGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 34620 0.66 0.658134
Target:  5'- cACAGCGCCGGGaUUGGuagcaGCGUC-GCa -3'
miRNA:   3'- -UGUCGUGGUCC-GACUuaa--CGCGGcCG- -5'
30694 5' -56.6 NC_006552.1 + 34845 0.68 0.516915
Target:  5'- aAUAGCGCCAGGUcggcguUGuAGUUGCccgaaaaGCUGGUa -3'
miRNA:   3'- -UGUCGUGGUCCG------AC-UUAACG-------CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 36532 0.68 0.538999
Target:  5'- cAUGGCugCAGuGgUGAucUGCGgCGGCg -3'
miRNA:   3'- -UGUCGugGUC-CgACUuaACGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 38314 0.68 0.538999
Target:  5'- cGCGGCAUCuucGGCgacguuGUUGaUGCCGGCc -3'
miRNA:   3'- -UGUCGUGGu--CCGacu---UAAC-GCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 38664 0.74 0.235993
Target:  5'- gGCGGCGCCGGGgUGuccagcgucagGCGCuCGGCc -3'
miRNA:   3'- -UGUCGUGGUCCgACuuaa-------CGCG-GCCG- -5'
30694 5' -56.6 NC_006552.1 + 38971 0.66 0.658134
Target:  5'- -gGGCGaCAGGUggcGAAacUGCGCCGGUc -3'
miRNA:   3'- ugUCGUgGUCCGa--CUUa-ACGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 39725 0.69 0.476927
Target:  5'- cCAGCGCgAuGUUGAGgaugUGCGCCaGGCc -3'
miRNA:   3'- uGUCGUGgUcCGACUUa---ACGCGG-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.