miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30695 3' -62.9 NC_006552.1 + 31931 0.66 0.401103
Target:  5'- gCGCCACCuuGUCgCCgauggcgaggcaguaGGCGGAauUGAUCGCGu -3'
miRNA:   3'- -GCGGUGG--CGG-GG---------------UCGCCU--ACUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 64221 0.68 0.289508
Target:  5'- cCGCUcgauGCUGCCCCcGCGGAUGAUa--- -3'
miRNA:   3'- -GCGG----UGGCGGGGuCGCCUACUGgcgu -5'
30695 3' -62.9 NC_006552.1 + 63523 0.68 0.303436
Target:  5'- cCGCCGCCGCCagcaCgAGCGugucacacGAUGGCuCGCu -3'
miRNA:   3'- -GCGGUGGCGGg---G-UCGC--------CUACUG-GCGu -5'
30695 3' -62.9 NC_006552.1 + 2224 0.68 0.303436
Target:  5'- gGCCGgCGCCguucuucugCCGGCGGAccUGcGCCGCc -3'
miRNA:   3'- gCGGUgGCGG---------GGUCGCCU--AC-UGGCGu -5'
30695 3' -62.9 NC_006552.1 + 33941 0.67 0.325283
Target:  5'- uGUCGCCGCCgUuGgGGGUGAUCgGCAg -3'
miRNA:   3'- gCGGUGGCGGgGuCgCCUACUGG-CGU- -5'
30695 3' -62.9 NC_006552.1 + 2842 0.67 0.338943
Target:  5'- gCGCUACUgGCUCCAGCacuccagugGACCGCAa -3'
miRNA:   3'- -GCGGUGG-CGGGGUCGccua-----CUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 46943 0.67 0.340486
Target:  5'- uCGCCGCCGaCUCCAGCGcuccGGUuGgCGCAc -3'
miRNA:   3'- -GCGGUGGC-GGGGUCGC----CUAcUgGCGU- -5'
30695 3' -62.9 NC_006552.1 + 57854 0.66 0.355399
Target:  5'- gCGCCAucugucgugcugcCCGCCCCAGUucc--GCCGCAg -3'
miRNA:   3'- -GCGGU-------------GGCGGGGUCGccuacUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 40508 0.66 0.356196
Target:  5'- aCGCCA-CGUCCUucGGCGGAaGcGCCGCu -3'
miRNA:   3'- -GCGGUgGCGGGG--UCGCCUaC-UGGCGu -5'
30695 3' -62.9 NC_006552.1 + 6647 0.68 0.289508
Target:  5'- aGCCGCUGCCCacugugacuGCGGcaaACCGCGg -3'
miRNA:   3'- gCGGUGGCGGGgu-------CGCCuacUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 61610 0.68 0.276087
Target:  5'- aGCCGCCGgCgCCGGCaGGAcuuGCCGCu -3'
miRNA:   3'- gCGGUGGCgG-GGUCG-CCUac-UGGCGu -5'
30695 3' -62.9 NC_006552.1 + 39778 0.68 0.276087
Target:  5'- uGCUGCCGUCCCAGCGaacagGGCCa-- -3'
miRNA:   3'- gCGGUGGCGGGGUCGCcua--CUGGcgu -5'
30695 3' -62.9 NC_006552.1 + 5229 0.77 0.064595
Target:  5'- aCGCa--CGCCCUAGCGGAUGuucACCGCGa -3'
miRNA:   3'- -GCGgugGCGGGGUCGCCUAC---UGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 8385 0.73 0.122992
Target:  5'- cCGCUcgAgCGCgCCCGGCGGAUGGuuguCCGCAg -3'
miRNA:   3'- -GCGG--UgGCG-GGGUCGCCUACU----GGCGU- -5'
30695 3' -62.9 NC_006552.1 + 38912 0.72 0.151589
Target:  5'- cCGUgGCCGCgCCCAGCGGGUagUCGCc -3'
miRNA:   3'- -GCGgUGGCG-GGGUCGCCUAcuGGCGu -5'
30695 3' -62.9 NC_006552.1 + 59759 0.71 0.172411
Target:  5'- gCGCCaguuguucGCCGCgCUGGCGGGUGAUCgGCGg -3'
miRNA:   3'- -GCGG--------UGGCGgGGUCGCCUACUGG-CGU- -5'
30695 3' -62.9 NC_006552.1 + 7935 0.7 0.200735
Target:  5'- aCGCCcUCGCCgaCGGCGcacGUGACCGCAu -3'
miRNA:   3'- -GCGGuGGCGGg-GUCGCc--UACUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 33490 0.7 0.207902
Target:  5'- gCGCCACCuGCCCggacuucuuuuccaGGCGGAUGGCaGUAc -3'
miRNA:   3'- -GCGGUGG-CGGGg-------------UCGCCUACUGgCGU- -5'
30695 3' -62.9 NC_006552.1 + 56733 0.7 0.216363
Target:  5'- uGCC-CUGCUUCAGCaGGAUGuCCGCc -3'
miRNA:   3'- gCGGuGGCGGGGUCG-CCUACuGGCGu -5'
30695 3' -62.9 NC_006552.1 + 38228 0.68 0.262535
Target:  5'- gCGUUGCCGUCagGGCGGAuguaguggacaccUGGCCGCAc -3'
miRNA:   3'- -GCGGUGGCGGggUCGCCU-------------ACUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.