miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30697 5' -47.8 NC_006552.1 + 54137 0.66 0.984783
Target:  5'- gCCGggcUUCAGCAGGcUGUAGgCGUGc-- -3'
miRNA:   3'- -GGUa--AAGUCGUCC-ACGUUgGUACuuu -5'
30697 5' -47.8 NC_006552.1 + 3886 0.66 0.977738
Target:  5'- ---gUUCaAGCGGGUGacGCCAUGAGc -3'
miRNA:   3'- gguaAAG-UCGUCCACguUGGUACUUu -5'
30697 5' -47.8 NC_006552.1 + 57106 0.67 0.974631
Target:  5'- gCCAggUUCAGCAGGUucgugGCGcguuccgGCCAUGc-- -3'
miRNA:   3'- -GGUa-AAGUCGUCCA-----CGU-------UGGUACuuu -5'
30697 5' -47.8 NC_006552.1 + 35939 0.67 0.960669
Target:  5'- gCCAggcUUCagauAGCGGGUGUAcagccaaACCGUGGGAu -3'
miRNA:   3'- -GGUa--AAG----UCGUCCACGU-------UGGUACUUU- -5'
30697 5' -47.8 NC_006552.1 + 36564 0.68 0.946226
Target:  5'- uCCAg--CGGCAGGUaacggcggccguagGCAAUCAUGGc- -3'
miRNA:   3'- -GGUaaaGUCGUCCA--------------CGUUGGUACUuu -5'
30697 5' -47.8 NC_006552.1 + 59701 0.69 0.912737
Target:  5'- gCCAUUcucgUAGCGGGUGgAGCCGUa--- -3'
miRNA:   3'- -GGUAAa---GUCGUCCACgUUGGUAcuuu -5'
30697 5' -47.8 NC_006552.1 + 62873 0.69 0.910695
Target:  5'- ---aUUCAGCagcucAGGUGCAgcuuucacgagguaACCAUGAAAc -3'
miRNA:   3'- gguaAAGUCG-----UCCACGU--------------UGGUACUUU- -5'
30697 5' -47.8 NC_006552.1 + 33934 0.7 0.8986
Target:  5'- gCCGUUgggggugaUCGGCAGGccgGUAGCCGUGu-- -3'
miRNA:   3'- -GGUAA--------AGUCGUCCa--CGUUGGUACuuu -5'
30697 5' -47.8 NC_006552.1 + 39794 0.72 0.79054
Target:  5'- uCCAguuagCAGCAGGUGCuGCCGUc--- -3'
miRNA:   3'- -GGUaaa--GUCGUCCACGuUGGUAcuuu -5'
30697 5' -47.8 NC_006552.1 + 4562 1.09 0.005814
Target:  5'- uCCAUUUCAGCAGGUGCAACCAUGAAAg -3'
miRNA:   3'- -GGUAAAGUCGUCCACGUUGGUACUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.