Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30698 | 5' | -62.1 | NC_006552.1 | + | 55451 | 0.66 | 0.386504 |
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Target: 5'- ---aGCaugGCGCCGGCcuGCugaucaaucuUCGCCCGCuGCu -3' miRNA: 3'- augaCG---UGCGGCCG--UG----------AGCGGGCG-CG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 55489 | 0.68 | 0.30753 |
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Target: 5'- aGC-GCAUGUCGGCAUccuugaCGCUgGCGCg -3' miRNA: 3'- aUGaCGUGCGGCCGUGa-----GCGGgCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 55825 | 0.68 | 0.27958 |
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Target: 5'- gGCUGaaugccuggcCACuGCCGcGCACgUCGcCCCGUGCg -3' miRNA: 3'- aUGAC----------GUG-CGGC-CGUG-AGC-GGGCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 56038 | 0.69 | 0.26638 |
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Target: 5'- -cCUGCGCGuaGcCGCUCGCggcauCCGCGCg -3' miRNA: 3'- auGACGUGCggCcGUGAGCG-----GGCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 59765 | 0.75 | 0.102361 |
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Target: 5'- gGCUGCGCGCCaGUugUuCGC-CGCGCu -3' miRNA: 3'- aUGACGUGCGGcCGugA-GCGgGCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 61502 | 0.66 | 0.421628 |
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Target: 5'- -cCUGCuuCGuuCCGGCAgUUGCUCGCuGCg -3' miRNA: 3'- auGACGu-GC--GGCCGUgAGCGGGCG-CG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 63141 | 0.72 | 0.164988 |
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Target: 5'- cGCUugaGCGCGCCGGCG-UCGUgCGCGg -3' miRNA: 3'- aUGA---CGUGCGGCCGUgAGCGgGCGCg -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 65123 | 0.66 | 0.412667 |
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Target: 5'- aACgUGCGCGgcaUGGUugUaugcCGCCCGCGUc -3' miRNA: 3'- aUG-ACGUGCg--GCCGugA----GCGGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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