Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30698 | 5' | -62.1 | NC_006552.1 | + | 61502 | 0.66 | 0.421628 |
Target: 5'- -cCUGCuuCGuuCCGGCAgUUGCUCGCuGCg -3' miRNA: 3'- auGACGu-GC--GGCCGUgAGCGGGCG-CG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 44672 | 0.72 | 0.15661 |
Target: 5'- gGCcGCcuucaGCCGGC-CUUGCUCGCGCa -3' miRNA: 3'- aUGaCGug---CGGCCGuGAGCGGGCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 63141 | 0.72 | 0.164988 |
Target: 5'- cGCUugaGCGCGCCGGCG-UCGUgCGCGg -3' miRNA: 3'- aUGA---CGUGCGGCCGUgAGCGgGCGCg -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 51578 | 0.72 | 0.164988 |
Target: 5'- cGCUGCGCcuuGUCGGCACggGCCUGCucgGCg -3' miRNA: 3'- aUGACGUG---CGGCCGUGagCGGGCG---CG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 50497 | 0.72 | 0.17109 |
Target: 5'- aUGCUGCACGCCacgaGCGCucaggaaguucaccaUCGCgCCGCGg -3' miRNA: 3'- -AUGACGUGCGGc---CGUG---------------AGCG-GGCGCg -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 31988 | 0.71 | 0.182959 |
Target: 5'- -gUUGCACGCCGGC-CagGaugCCGCGCu -3' miRNA: 3'- auGACGUGCGGCCGuGagCg--GGCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 3501 | 0.71 | 0.197554 |
Target: 5'- cGCUcgacCACGCCGGCAucCUCaCCgCGCGCg -3' miRNA: 3'- aUGAc---GUGCGGCCGU--GAGcGG-GCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 39244 | 0.7 | 0.213154 |
Target: 5'- gACUGCACuaCCaGGCACcggaGCCCGCGa -3' miRNA: 3'- aUGACGUGc-GG-CCGUGag--CGGGCGCg -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 45470 | 0.7 | 0.218584 |
Target: 5'- gGCgucgGcCACGuuGGCGCUgGCCgcUGCGCg -3' miRNA: 3'- aUGa---C-GUGCggCCGUGAgCGG--GCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 30945 | 0.72 | 0.155386 |
Target: 5'- -gUUGUACG-CGGCGCaguacuugauggugUCGCCCGCGUa -3' miRNA: 3'- auGACGUGCgGCCGUG--------------AGCGGGCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 38654 | 0.72 | 0.152566 |
Target: 5'- gGgUGUccaGCGUCaGGCGCUCgGCCUGCGCg -3' miRNA: 3'- aUgACG---UGCGG-CCGUGAG-CGGGCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 12258 | 0.72 | 0.152566 |
Target: 5'- aACcGCcuGCGCCGGCGCccgcCGCCgGUGCg -3' miRNA: 3'- aUGaCG--UGCGGCCGUGa---GCGGgCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 16700 | 0.8 | 0.039069 |
Target: 5'- cACUGCGaGCCGGC-CUgaGCCCGCGCg -3' miRNA: 3'- aUGACGUgCGGCCGuGAg-CGGGCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 20728 | 0.78 | 0.056076 |
Target: 5'- cGCUGCcgGCGCCGGCAgaCGCCCcagGCGUu -3' miRNA: 3'- aUGACG--UGCGGCCGUgaGCGGG---CGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 39039 | 0.77 | 0.066906 |
Target: 5'- cGCaGCACGuuGGCGCgcgcgaucagcagaCGCCCGCGCc -3' miRNA: 3'- aUGaCGUGCggCCGUGa-------------GCGGGCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 59765 | 0.75 | 0.102361 |
Target: 5'- gGCUGCGCGCCaGUugUuCGC-CGCGCu -3' miRNA: 3'- aUGACGUGCGGcCGugA-GCGgGCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 32315 | 0.74 | 0.108025 |
Target: 5'- aGCauggGCACGCCGuCGCUCGCCaucuGCGCc -3' miRNA: 3'- aUGa---CGUGCGGCcGUGAGCGGg---CGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 46917 | 0.73 | 0.140999 |
Target: 5'- gGC-GCACcagcaGCCGGCAacaccuggcCUCGCCCGgGCg -3' miRNA: 3'- aUGaCGUG-----CGGCCGU---------GAGCGGGCgCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 53953 | 0.72 | 0.148618 |
Target: 5'- gGCUcCACGCCGGUcuGCUCGCggaUCGCGUc -3' miRNA: 3'- aUGAcGUGCGGCCG--UGAGCG---GGCGCG- -5' |
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30698 | 5' | -62.1 | NC_006552.1 | + | 29297 | 0.72 | 0.152566 |
Target: 5'- cUGCUGCcucaucccgcagGCGuuGuaGCUUGCCUGCGCg -3' miRNA: 3'- -AUGACG------------UGCggCcgUGAGCGGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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