miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30698 5' -62.1 NC_006552.1 + 21016 0.67 0.348571
Target:  5'- cGCgGCGCGCCGacgguccaugucuucGCGCUCG-UgGCGCa -3'
miRNA:   3'- aUGaCGUGCGGC---------------CGUGAGCgGgCGCG- -5'
30698 5' -62.1 NC_006552.1 + 50437 0.67 0.337566
Target:  5'- cUGCgGCAUGUCGGCGCgagggaUGCCCacgGUGCc -3'
miRNA:   3'- -AUGaCGUGCGGCCGUGa-----GCGGG---CGCG- -5'
30698 5' -62.1 NC_006552.1 + 37050 0.67 0.337566
Target:  5'- uUACUGC-CGuCCGGCGCcaccggaCGCCauugcagGCGCa -3'
miRNA:   3'- -AUGACGuGC-GGCCGUGa------GCGGg------CGCG- -5'
30698 5' -62.1 NC_006552.1 + 31785 0.67 0.329861
Target:  5'- gACUGCGCcgaGGCGCUCG-CCGUGg -3'
miRNA:   3'- aUGACGUGcggCCGUGAGCgGGCGCg -5'
30698 5' -62.1 NC_006552.1 + 44506 0.67 0.321536
Target:  5'- --aUGgGCGCCGGCAgUCcugugccGCCCGC-Ca -3'
miRNA:   3'- augACgUGCGGCCGUgAG-------CGGGCGcG- -5'
30698 5' -62.1 NC_006552.1 + 49694 0.68 0.314843
Target:  5'- cUGCUGCGCGUCaGC-CUUGCCUuGgGCc -3'
miRNA:   3'- -AUGACGUGCGGcCGuGAGCGGG-CgCG- -5'
30698 5' -62.1 NC_006552.1 + 8459 0.68 0.314843
Target:  5'- aACUGCGCcagGCCcuGGCGCUuaccccguuUGCCCGUGa -3'
miRNA:   3'- aUGACGUG---CGG--CCGUGA---------GCGGGCGCg -5'
30698 5' -62.1 NC_006552.1 + 29012 0.68 0.314843
Target:  5'- ---aGCAuCGCCGGCACccgCGUCgGCuGCg -3'
miRNA:   3'- augaCGU-GCGGCCGUGa--GCGGgCG-CG- -5'
30698 5' -62.1 NC_006552.1 + 55489 0.68 0.30753
Target:  5'- aGC-GCAUGUCGGCAUccuugaCGCUgGCGCg -3'
miRNA:   3'- aUGaCGUGCGGCCGUGa-----GCGGgCGCG- -5'
30698 5' -62.1 NC_006552.1 + 29105 0.68 0.30753
Target:  5'- ---aGCcgaaGCGCCGGCG-UCaCCCGCGCc -3'
miRNA:   3'- augaCG----UGCGGCCGUgAGcGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 52322 0.68 0.300348
Target:  5'- cUGCUGCGCcUCGGCGacCUCGgCgGCGUg -3'
miRNA:   3'- -AUGACGUGcGGCCGU--GAGCgGgCGCG- -5'
30698 5' -62.1 NC_006552.1 + 10459 0.68 0.293295
Target:  5'- gGCUGUGCGaCGGCGCccUGCuCCGCGa -3'
miRNA:   3'- aUGACGUGCgGCCGUGa-GCG-GGCGCg -5'
30698 5' -62.1 NC_006552.1 + 22472 0.68 0.293295
Target:  5'- aACUGCgguGCCGGUACgaacacuccgCGCUCGaCGCg -3'
miRNA:   3'- aUGACGug-CGGCCGUGa---------GCGGGC-GCG- -5'
30698 5' -62.1 NC_006552.1 + 13215 0.68 0.292597
Target:  5'- aACUgGCACGCCaGCagcgagaGCUUGCCgCgGCGCg -3'
miRNA:   3'- aUGA-CGUGCGGcCG-------UGAGCGG-G-CGCG- -5'
30698 5' -62.1 NC_006552.1 + 49653 0.68 0.286373
Target:  5'- -cCUGCACGCCgauuggcgucGGgGCUUGCUgcUGCGCc -3'
miRNA:   3'- auGACGUGCGG----------CCgUGAGCGG--GCGCG- -5'
30698 5' -62.1 NC_006552.1 + 15025 0.68 0.286373
Target:  5'- gUACUGCGCGCUGGUcgGCUaucUGC-CGCaGCa -3'
miRNA:   3'- -AUGACGUGCGGCCG--UGA---GCGgGCG-CG- -5'
30698 5' -62.1 NC_006552.1 + 55825 0.68 0.27958
Target:  5'- gGCUGaaugccuggcCACuGCCGcGCACgUCGcCCCGUGCg -3'
miRNA:   3'- aUGAC----------GUG-CGGC-CGUG-AGC-GGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 40935 0.69 0.272916
Target:  5'- gUugUGguCGCCGGCACUa-CCgGCaGCg -3'
miRNA:   3'- -AugACguGCGGCCGUGAgcGGgCG-CG- -5'
30698 5' -62.1 NC_006552.1 + 56038 0.69 0.26638
Target:  5'- -cCUGCGCGuaGcCGCUCGCggcauCCGCGCg -3'
miRNA:   3'- auGACGUGCggCcGUGAGCG-----GGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 4021 0.69 0.26638
Target:  5'- aUGCgacCACGCuCGGCAa--GCCUGCGCc -3'
miRNA:   3'- -AUGac-GUGCG-GCCGUgagCGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.