miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30698 5' -62.1 NC_006552.1 + 20728 0.78 0.056076
Target:  5'- cGCUGCcgGCGCCGGCAgaCGCCCcagGCGUu -3'
miRNA:   3'- aUGACG--UGCGGCCGUgaGCGGG---CGCG- -5'
30698 5' -62.1 NC_006552.1 + 20785 0.67 0.353366
Target:  5'- gAUUGCGCuGCCGGCcggcgaaaccgGCUCGaguaCGUGCu -3'
miRNA:   3'- aUGACGUG-CGGCCG-----------UGAGCgg--GCGCG- -5'
30698 5' -62.1 NC_006552.1 + 21016 0.67 0.348571
Target:  5'- cGCgGCGCGCCGacgguccaugucuucGCGCUCG-UgGCGCa -3'
miRNA:   3'- aUGaCGUGCGGC---------------CGUGAGCgGgCGCG- -5'
30698 5' -62.1 NC_006552.1 + 21690 0.69 0.241498
Target:  5'- -gUUGCAgaUGCCGGCgAUUCGUaCCGUGCa -3'
miRNA:   3'- auGACGU--GCGGCCG-UGAGCG-GGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 22472 0.68 0.293295
Target:  5'- aACUGCgguGCCGGUACgaacacuccgCGCUCGaCGCg -3'
miRNA:   3'- aUGACGug-CGGCCGUGa---------GCGGGC-GCG- -5'
30698 5' -62.1 NC_006552.1 + 24599 0.66 0.420727
Target:  5'- ---cGCugGuCCGggucgauggugauGCGCUCGCCCaugucGCGCa -3'
miRNA:   3'- augaCGugC-GGC-------------CGUGAGCGGG-----CGCG- -5'
30698 5' -62.1 NC_006552.1 + 29012 0.68 0.314843
Target:  5'- ---aGCAuCGCCGGCACccgCGUCgGCuGCg -3'
miRNA:   3'- augaCGU-GCGGCCGUGa--GCGGgCG-CG- -5'
30698 5' -62.1 NC_006552.1 + 29105 0.68 0.30753
Target:  5'- ---aGCcgaaGCGCCGGCG-UCaCCCGCGCc -3'
miRNA:   3'- augaCG----UGCGGCCGUgAGcGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 29297 0.72 0.152566
Target:  5'- cUGCUGCcucaucccgcagGCGuuGuaGCUUGCCUGCGCg -3'
miRNA:   3'- -AUGACG------------UGCggCcgUGAGCGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 29333 0.69 0.259971
Target:  5'- -cCUGCgACGUCGGgGcCUCGCCUGcCGUg -3'
miRNA:   3'- auGACG-UGCGGCCgU-GAGCGGGC-GCG- -5'
30698 5' -62.1 NC_006552.1 + 30945 0.72 0.155386
Target:  5'- -gUUGUACG-CGGCGCaguacuugauggugUCGCCCGCGUa -3'
miRNA:   3'- auGACGUGCgGCCGUG--------------AGCGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 31076 0.66 0.385651
Target:  5'- aACgGCAUGCCGGaguGCUCggaugccgcccagGCuuGCGCc -3'
miRNA:   3'- aUGaCGUGCGGCCg--UGAG-------------CGggCGCG- -5'
30698 5' -62.1 NC_006552.1 + 31785 0.67 0.329861
Target:  5'- gACUGCGCcgaGGCGCUCG-CCGUGg -3'
miRNA:   3'- aUGACGUGcggCCGUGAGCgGGCGCg -5'
30698 5' -62.1 NC_006552.1 + 31988 0.71 0.182959
Target:  5'- -gUUGCACGCCGGC-CagGaugCCGCGCu -3'
miRNA:   3'- auGACGUGCGGCCGuGagCg--GGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 32315 0.74 0.108025
Target:  5'- aGCauggGCACGCCGuCGCUCGCCaucuGCGCc -3'
miRNA:   3'- aUGa---CGUGCGGCcGUGAGCGGg---CGCG- -5'
30698 5' -62.1 NC_006552.1 + 32552 0.66 0.402947
Target:  5'- uUGCgaGCGCGCUccugcugGGCcuGCUgaGCCUGCGCg -3'
miRNA:   3'- -AUGa-CGUGCGG-------CCG--UGAg-CGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 37050 0.67 0.337566
Target:  5'- uUACUGC-CGuCCGGCGCcaccggaCGCCauugcagGCGCa -3'
miRNA:   3'- -AUGACGuGC-GGCCGUGa------GCGGg------CGCG- -5'
30698 5' -62.1 NC_006552.1 + 38654 0.72 0.152566
Target:  5'- gGgUGUccaGCGUCaGGCGCUCgGCCUGCGCg -3'
miRNA:   3'- aUgACG---UGCGG-CCGUGAG-CGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 38793 0.66 0.37803
Target:  5'- ---aGCGCGCCGGCA-UCGgucacuUCCGCGa -3'
miRNA:   3'- augaCGUGCGGCCGUgAGC------GGGCGCg -5'
30698 5' -62.1 NC_006552.1 + 39039 0.77 0.066906
Target:  5'- cGCaGCACGuuGGCGCgcgcgaucagcagaCGCCCGCGCc -3'
miRNA:   3'- aUGaCGUGCggCCGUGa-------------GCGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.