Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30698 | 5' | -62.1 | NC_006552.1 | + | 53953 | 0.72 | 0.148618 |
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Target: 5'- gGCUcCACGCCGGUcuGCUCGCggaUCGCGUc -3' miRNA: 3'- aUGAcGUGCGGCCG--UGAGCG---GGCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 46917 | 0.73 | 0.140999 |
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Target: 5'- gGC-GCACcagcaGCCGGCAacaccuggcCUCGCCCGgGCg -3' miRNA: 3'- aUGaCGUG-----CGGCCGU---------GAGCGGGCgCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 32315 | 0.74 | 0.108025 |
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Target: 5'- aGCauggGCACGCCGuCGCUCGCCaucuGCGCc -3' miRNA: 3'- aUGa---CGUGCGGCcGUGAGCGGg---CGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 59765 | 0.75 | 0.102361 |
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Target: 5'- gGCUGCGCGCCaGUugUuCGC-CGCGCu -3' miRNA: 3'- aUGACGUGCGGcCGugA-GCGgGCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 39039 | 0.77 | 0.066906 |
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Target: 5'- cGCaGCACGuuGGCGCgcgcgaucagcagaCGCCCGCGCc -3' miRNA: 3'- aUGaCGUGCggCCGUGa-------------GCGGGCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 20728 | 0.78 | 0.056076 |
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Target: 5'- cGCUGCcgGCGCCGGCAgaCGCCCcagGCGUu -3' miRNA: 3'- aUGACG--UGCGGCCGUgaGCGGG---CGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 16700 | 0.8 | 0.039069 |
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Target: 5'- cACUGCGaGCCGGC-CUgaGCCCGCGCg -3' miRNA: 3'- aUGACGUgCGGCCGuGAg-CGGGCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 4784 | 1.09 | 0.000237 |
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Target: 5'- cUACUGCACGCCGGCACUCGCCCGCGCa -3' miRNA: 3'- -AUGACGUGCGGCCGUGAGCGGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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