miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30699 3' -59.6 NC_006552.1 + 52800 0.67 0.465417
Target:  5'- cGUCGGCGGUgUCGCCUgucACCAGcuuaCGGAa -3'
miRNA:   3'- -UAGCCGUUA-GGCGGGa--UGGUCc---GCCU- -5'
30699 3' -59.6 NC_006552.1 + 8574 0.67 0.464445
Target:  5'- uUCGGCGGcgcggcuUCUGUCCUGCU--GCGGAa -3'
miRNA:   3'- uAGCCGUU-------AGGCGGGAUGGucCGCCU- -5'
30699 3' -59.6 NC_006552.1 + 26826 0.67 0.446189
Target:  5'- -gCaGCAGUUCGCCCaccaggguccgGCCGGcGCGGAa -3'
miRNA:   3'- uaGcCGUUAGGCGGGa----------UGGUC-CGCCU- -5'
30699 3' -59.6 NC_006552.1 + 39258 0.67 0.427413
Target:  5'- cUCGGCAGggacaggaCUGCaCUACCAGGCaccGGAg -3'
miRNA:   3'- uAGCCGUUa-------GGCGgGAUGGUCCG---CCU- -5'
30699 3' -59.6 NC_006552.1 + 57645 0.67 0.426487
Target:  5'- -gCGGCGuccuucaGUUCGCCCUGCgCcuGCGGGa -3'
miRNA:   3'- uaGCCGU-------UAGGCGGGAUG-GucCGCCU- -5'
30699 3' -59.6 NC_006552.1 + 52368 0.67 0.418202
Target:  5'- gGUUGGCGAcagccuUCUGCUgcgCUGCCcGGCGGGc -3'
miRNA:   3'- -UAGCCGUU------AGGCGG---GAUGGuCCGCCU- -5'
30699 3' -59.6 NC_006552.1 + 46191 0.68 0.382599
Target:  5'- cGUCGGCAAaaaacaucUCCGgCUUGCCGGG-GGc -3'
miRNA:   3'- -UAGCCGUU--------AGGCgGGAUGGUCCgCCu -5'
30699 3' -59.6 NC_006552.1 + 20397 0.68 0.365569
Target:  5'- -gCGGCAaccgugaaucGUCCGCCCU-CCcGGCGa- -3'
miRNA:   3'- uaGCCGU----------UAGGCGGGAuGGuCCGCcu -5'
30699 3' -59.6 NC_006552.1 + 33511 0.69 0.354784
Target:  5'- cGUCGGCcgaGAUCUGCaggcgcgccaCCUGCCcggacuucuuuuccAGGCGGAu -3'
miRNA:   3'- -UAGCCG---UUAGGCG----------GGAUGG--------------UCCGCCU- -5'
30699 3' -59.6 NC_006552.1 + 9727 0.69 0.354784
Target:  5'- -cUGGCGAU-CGCCCUGCUgcaccacagcgaagGGGCGGc -3'
miRNA:   3'- uaGCCGUUAgGCGGGAUGG--------------UCCGCCu -5'
30699 3' -59.6 NC_006552.1 + 53925 0.69 0.34907
Target:  5'- cGUCGGcCAAUaUgGCCCaUGCC-GGCGGAa -3'
miRNA:   3'- -UAGCC-GUUA-GgCGGG-AUGGuCCGCCU- -5'
30699 3' -59.6 NC_006552.1 + 63427 0.7 0.281514
Target:  5'- gGUgGGCGAggCCaacgaGCUCUACCAGuGCGGAa -3'
miRNA:   3'- -UAgCCGUUa-GG-----CGGGAUGGUC-CGCCU- -5'
30699 3' -59.6 NC_006552.1 + 23127 0.71 0.248684
Target:  5'- gGUCGGCGgugaucugcGUCCGCuCCUGcugcuCCAGGCGa- -3'
miRNA:   3'- -UAGCCGU---------UAGGCG-GGAU-----GGUCCGCcu -5'
30699 3' -59.6 NC_006552.1 + 770 0.72 0.207576
Target:  5'- cUCGGCAucaucgCCGCCCUcggccugGCCGuGGUGGGg -3'
miRNA:   3'- uAGCCGUua----GGCGGGA-------UGGU-CCGCCU- -5'
30699 3' -59.6 NC_006552.1 + 25486 0.75 0.140103
Target:  5'- uGUCGGCGA-CgGCUC-GCCAGGCGGGc -3'
miRNA:   3'- -UAGCCGUUaGgCGGGaUGGUCCGCCU- -5'
30699 3' -59.6 NC_006552.1 + 5499 1.06 0.000661
Target:  5'- gAUCGGCAAUCCGCCCUACCAGGCGGAc -3'
miRNA:   3'- -UAGCCGUUAGGCGGGAUGGUCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.