miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30699 5' -55.6 NC_006552.1 + 46445 0.66 0.725418
Target:  5'- -gUCCggccugugcaaUGGCCUGUUGCUGCcguGCcGCg -3'
miRNA:   3'- aaAGG-----------ACCGGGCGACGAUGcu-UGaCG- -5'
30699 5' -55.6 NC_006552.1 + 49224 0.66 0.725418
Target:  5'- -cUCCUcggcaGCCUGCUGgaGCGcggccuGCUGCa -3'
miRNA:   3'- aaAGGAc----CGGGCGACgaUGCu-----UGACG- -5'
30699 5' -55.6 NC_006552.1 + 6998 0.66 0.724352
Target:  5'- --cCCUGGCCgaagccaCGCUGCgcCGggUgGCu -3'
miRNA:   3'- aaaGGACCGG-------GCGACGauGCuuGaCG- -5'
30699 5' -55.6 NC_006552.1 + 22641 0.66 0.714718
Target:  5'- -gUUCgaauGCCCGauaucgaucGCUGCGAACUGCu -3'
miRNA:   3'- aaAGGac--CGGGCga-------CGAUGCUUGACG- -5'
30699 5' -55.6 NC_006552.1 + 27208 0.66 0.693082
Target:  5'- --gCCUGGUcgauCUGCUGCUG-GAuCUGCu -3'
miRNA:   3'- aaaGGACCG----GGCGACGAUgCUuGACG- -5'
30699 5' -55.6 NC_006552.1 + 50108 0.67 0.660212
Target:  5'- -cUCCUuaucGGCCCGCUGCggcuucgccaggUucgccuCGAACUGg -3'
miRNA:   3'- aaAGGA----CCGGGCGACG------------Au-----GCUUGACg -5'
30699 5' -55.6 NC_006552.1 + 40195 0.67 0.660212
Target:  5'- -cUCCUGGCCaGCcGCU-CGAcaGCgGCg -3'
miRNA:   3'- aaAGGACCGGgCGaCGAuGCU--UGaCG- -5'
30699 5' -55.6 NC_006552.1 + 57988 0.67 0.660212
Target:  5'- -gUCCccGGCgcgcagcgagCCGCUGCcGCGGGcCUGCg -3'
miRNA:   3'- aaAGGa-CCG----------GGCGACGaUGCUU-GACG- -5'
30699 5' -55.6 NC_006552.1 + 55161 0.67 0.627103
Target:  5'- -gUCCgcacGGCCUuaccaaGCUGCgg-GAACUGCa -3'
miRNA:   3'- aaAGGa---CCGGG------CGACGaugCUUGACG- -5'
30699 5' -55.6 NC_006552.1 + 45583 0.67 0.627103
Target:  5'- --aUCUGcGCCUGCUGUacgGCGuuCUGCa -3'
miRNA:   3'- aaaGGAC-CGGGCGACGa--UGCuuGACG- -5'
30699 5' -55.6 NC_006552.1 + 11188 0.67 0.605036
Target:  5'- --cCCUGGCCCug-GCcGCGAGCcGCc -3'
miRNA:   3'- aaaGGACCGGGcgaCGaUGCUUGaCG- -5'
30699 5' -55.6 NC_006552.1 + 14731 0.68 0.561254
Target:  5'- --cCCUaGGCCCGauCUGggGCGGACUGa -3'
miRNA:   3'- aaaGGA-CCGGGC--GACgaUGCUUGACg -5'
30699 5' -55.6 NC_006552.1 + 2611 0.68 0.550431
Target:  5'- -aUCCUGGCUCGacaaggGCgcCGAGCgcgGCa -3'
miRNA:   3'- aaAGGACCGGGCga----CGauGCUUGa--CG- -5'
30699 5' -55.6 NC_006552.1 + 29749 0.69 0.497432
Target:  5'- -gUCUUGcGCguucggCUGCUGCUGCG-ACUGCu -3'
miRNA:   3'- aaAGGAC-CG------GGCGACGAUGCuUGACG- -5'
30699 5' -55.6 NC_006552.1 + 42620 0.7 0.446844
Target:  5'- -aUCCUGGCCCGUcucguagaUGCUgGCGuACcggGCg -3'
miRNA:   3'- aaAGGACCGGGCG--------ACGA-UGCuUGa--CG- -5'
30699 5' -55.6 NC_006552.1 + 41308 0.7 0.446844
Target:  5'- --gCUUGGCaCGCUGCUccucgucauCGAACUGCc -3'
miRNA:   3'- aaaGGACCGgGCGACGAu--------GCUUGACG- -5'
30699 5' -55.6 NC_006552.1 + 58208 0.71 0.427421
Target:  5'- uUUUgCUGGCCuUGgaGUaUACGAACUGCg -3'
miRNA:   3'- -AAAgGACCGG-GCgaCG-AUGCUUGACG- -5'
30699 5' -55.6 NC_006552.1 + 17010 0.71 0.390126
Target:  5'- -aUCCUGGUaggCGCcccuuCUACGGACUGCa -3'
miRNA:   3'- aaAGGACCGg--GCGac---GAUGCUUGACG- -5'
30699 5' -55.6 NC_006552.1 + 46867 0.73 0.322207
Target:  5'- --aCUUGGCgCCGCUGCacccUGGGCUGCu -3'
miRNA:   3'- aaaGGACCG-GGCGACGau--GCUUGACG- -5'
30699 5' -55.6 NC_006552.1 + 5461 1.09 0.000903
Target:  5'- gUUUCCUGGCCCGCUGCUACGAACUGCu -3'
miRNA:   3'- -AAAGGACCGGGCGACGAUGCUUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.