miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30700 3' -57 NC_006552.1 + 15853 0.66 0.623566
Target:  5'- cUGCGcGAcGCUcGCAACCGCUgcaagcgcccauuCGAACg -3'
miRNA:   3'- aACGC-CUaCGA-CGUUGGCGG-------------GCUUGa -5'
30700 3' -57 NC_006552.1 + 26939 0.66 0.635628
Target:  5'- cUGCGGAUcgcGCUGCGGCuCG-UUGAGCa -3'
miRNA:   3'- aACGCCUA---CGACGUUG-GCgGGCUUGa -5'
30700 3' -57 NC_006552.1 + 2441 0.67 0.559324
Target:  5'- -gGCGGgcGCUGCcGCgccugcgagcgaCGCCUGGACg -3'
miRNA:   3'- aaCGCCuaCGACGuUG------------GCGGGCUUGa -5'
30700 3' -57 NC_006552.1 + 36952 0.67 0.570116
Target:  5'- gUUGUGGAUGC-GCgGAUCGC-CGAACa -3'
miRNA:   3'- -AACGCCUACGaCG-UUGGCGgGCUUGa -5'
30700 3' -57 NC_006552.1 + 24236 0.67 0.570116
Target:  5'- -gGUGGAUGgUGCcgGACCGCauGGACg -3'
miRNA:   3'- aaCGCCUACgACG--UUGGCGggCUUGa -5'
30700 3' -57 NC_006552.1 + 43600 0.68 0.465606
Target:  5'- aUGCGGAUGCacCAGCgCGCCCuGGCc -3'
miRNA:   3'- aACGCCUACGacGUUG-GCGGGcUUGa -5'
30700 3' -57 NC_006552.1 + 8182 0.68 0.506374
Target:  5'- gUGCuGAUGgaGCAucacgACCGgCCGAGCa -3'
miRNA:   3'- aACGcCUACgaCGU-----UGGCgGGCUUGa -5'
30700 3' -57 NC_006552.1 + 52373 0.69 0.440041
Target:  5'- cUGCGGGuuggcgacagccuucUGCUGC-GCUGCCCGGc-- -3'
miRNA:   3'- aACGCCU---------------ACGACGuUGGCGGGCUuga -5'
30700 3' -57 NC_006552.1 + 40334 0.69 0.44587
Target:  5'- aUUGCGGAaGCU-CAuGCUGCUCGAGCa -3'
miRNA:   3'- -AACGCCUaCGAcGU-UGGCGGGCUUGa -5'
30700 3' -57 NC_006552.1 + 52099 0.72 0.306789
Target:  5'- -gGUGGAagaaGCUGUAGCCGCCUGAc-- -3'
miRNA:   3'- aaCGCCUa---CGACGUUGGCGGGCUuga -5'
30700 3' -57 NC_006552.1 + 5972 1.05 0.001162
Target:  5'- cUUGCGGAUGCUGCAACCGCCCGAACUg -3'
miRNA:   3'- -AACGCCUACGACGUUGGCGGGCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.