miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30700 5' -47.6 NC_006552.1 + 5933 1.12 0.005805
Target:  5'- gGGAUUUCCGACCGACUACAUCAUCGAc -3'
miRNA:   3'- -CCUAAAGGCUGGCUGAUGUAGUAGCU- -5'
30700 5' -47.6 NC_006552.1 + 19624 0.69 0.96033
Target:  5'- cGGAgauuUUUCCGACCuGcCUGCAUCGgauuuuucuccgaccUCGGa -3'
miRNA:   3'- -CCU----AAAGGCUGG-CuGAUGUAGU---------------AGCU- -5'
30700 5' -47.6 NC_006552.1 + 47827 0.69 0.96629
Target:  5'- cGGGUUg-CG-CCGACUGCGUUugcugGUCGAu -3'
miRNA:   3'- -CCUAAagGCuGGCUGAUGUAG-----UAGCU- -5'
30700 5' -47.6 NC_006552.1 + 7065 0.68 0.972814
Target:  5'- uGGAagaCCGcaGCCGACUGCAUCgacugGUCGu -3'
miRNA:   3'- -CCUaaaGGC--UGGCUGAUGUAG-----UAGCu -5'
30700 5' -47.6 NC_006552.1 + 20511 0.67 0.986907
Target:  5'- uGGAUUUCCGgcgucauaagcACCGuuuCaGCcUCGUCGAa -3'
miRNA:   3'- -CCUAAAGGC-----------UGGCu--GaUGuAGUAGCU- -5'
30700 5' -47.6 NC_006552.1 + 41864 0.67 0.99139
Target:  5'- uGGA---CCGuuaucGCCGGCUGCuccugccgGUCGUCGAa -3'
miRNA:   3'- -CCUaaaGGC-----UGGCUGAUG--------UAGUAGCU- -5'
30700 5' -47.6 NC_006552.1 + 2746 0.66 0.993632
Target:  5'- cGGcgUUCCGgcGCCG-CUGCGccUCAcCGAg -3'
miRNA:   3'- -CCuaAAGGC--UGGCuGAUGU--AGUaGCU- -5'
30700 5' -47.6 NC_006552.1 + 35236 0.66 0.99538
Target:  5'- ----gUCCaGGCCGACUACGUaCAUgGu -3'
miRNA:   3'- ccuaaAGG-CUGGCUGAUGUA-GUAgCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.