miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30701 5' -58.4 NC_006552.1 + 18886 0.66 0.611438
Target:  5'- aGCGGCCGcucACgGCCGaagaaaagcAGGAgUGCCa -3'
miRNA:   3'- -UGCCGGCaa-UGgUGGU---------UCCUgGCGGa -5'
30701 5' -58.4 NC_006552.1 + 36733 0.66 0.60079
Target:  5'- cGCGauGCCGaUAuCCACCGAGucgaaGCCGCCg -3'
miRNA:   3'- -UGC--CGGCaAU-GGUGGUUCc----UGGCGGa -5'
30701 5' -58.4 NC_006552.1 + 56405 0.66 0.590166
Target:  5'- gAUGGUCuugUGCCACC-AGGACaGCCc -3'
miRNA:   3'- -UGCCGGca-AUGGUGGuUCCUGgCGGa -5'
30701 5' -58.4 NC_006552.1 + 2203 0.66 0.589106
Target:  5'- gGCGGaCCugcGCCGCCAGGuguuggagaaaauGGCCGCCc -3'
miRNA:   3'- -UGCC-GGcaaUGGUGGUUC-------------CUGGCGGa -5'
30701 5' -58.4 NC_006552.1 + 55920 0.66 0.579576
Target:  5'- -aGuGCCGUgguagACCACCAAcGGCuCGCCc -3'
miRNA:   3'- ugC-CGGCAa----UGGUGGUUcCUG-GCGGa -5'
30701 5' -58.4 NC_006552.1 + 16875 0.66 0.558525
Target:  5'- gGCGGCgacCGUUGCUGCCu-GGAauuccgcauaccCCGCCg -3'
miRNA:   3'- -UGCCG---GCAAUGGUGGuuCCU------------GGCGGa -5'
30701 5' -58.4 NC_006552.1 + 29860 0.67 0.54808
Target:  5'- gAUGGCCucgaaucgGUUGCCAgCCgGAGGcuuGCCGCCc -3'
miRNA:   3'- -UGCCGG--------CAAUGGU-GG-UUCC---UGGCGGa -5'
30701 5' -58.4 NC_006552.1 + 61617 0.67 0.537696
Target:  5'- cUGGCCGa-GCCGCCGgcgccggcAGGACuUGCCg -3'
miRNA:   3'- uGCCGGCaaUGGUGGU--------UCCUG-GCGGa -5'
30701 5' -58.4 NC_006552.1 + 42896 0.67 0.527381
Target:  5'- gAUGGuuGccugauCCACCAgcAGGugCGCCg -3'
miRNA:   3'- -UGCCggCaau---GGUGGU--UCCugGCGGa -5'
30701 5' -58.4 NC_006552.1 + 45637 0.67 0.511035
Target:  5'- cCGGCCGcUagcugagcgguguacUGCC-CCAGGGccuucGCCGCCUc -3'
miRNA:   3'- uGCCGGC-A---------------AUGGuGGUUCC-----UGGCGGA- -5'
30701 5' -58.4 NC_006552.1 + 3540 0.67 0.500926
Target:  5'- cCGGCCGgacguccaaccugGCCGCCGcacGGACCugGCCg -3'
miRNA:   3'- uGCCGGCaa-----------UGGUGGUu--CCUGG--CGGa -5'
30701 5' -58.4 NC_006552.1 + 62551 0.68 0.467252
Target:  5'- gGCGGCCcUU-CUggGCUAGGGACCGCg- -3'
miRNA:   3'- -UGCCGGcAAuGG--UGGUUCCUGGCGga -5'
30701 5' -58.4 NC_006552.1 + 31364 0.69 0.429189
Target:  5'- uACGG-CGUgaaACCGCCGAacuGGCCGCCg -3'
miRNA:   3'- -UGCCgGCAa--UGGUGGUUc--CUGGCGGa -5'
30701 5' -58.4 NC_006552.1 + 3152 0.69 0.419961
Target:  5'- cCGGCUGgaccUGCUACCcGGaGACUGCCg -3'
miRNA:   3'- uGCCGGCa---AUGGUGGuUC-CUGGCGGa -5'
30701 5' -58.4 NC_006552.1 + 1221 0.69 0.40545
Target:  5'- cGCGcGCCaccaacuaccugGCCGCCAAGGGCCugGCCg -3'
miRNA:   3'- -UGC-CGGcaa---------UGGUGGUUCCUGG--CGGa -5'
30701 5' -58.4 NC_006552.1 + 7972 0.7 0.384285
Target:  5'- gACcGCCuUUACCGCCAcuGGcACCGCCUc -3'
miRNA:   3'- -UGcCGGcAAUGGUGGUu-CC-UGGCGGA- -5'
30701 5' -58.4 NC_006552.1 + 55046 0.7 0.367217
Target:  5'- cGCGGCCGUUGaacgUCACCAGaacaucgcuGACCGCUa -3'
miRNA:   3'- -UGCCGGCAAU----GGUGGUUc--------CUGGCGGa -5'
30701 5' -58.4 NC_006552.1 + 10608 0.71 0.326873
Target:  5'- cACGGCgaagGCCGCCGAGGAuCUGCUg -3'
miRNA:   3'- -UGCCGgcaaUGGUGGUUCCU-GGCGGa -5'
30701 5' -58.4 NC_006552.1 + 13004 0.71 0.304289
Target:  5'- -aGGCCug-GCCACCGAGGACUuGCUc -3'
miRNA:   3'- ugCCGGcaaUGGUGGUUCCUGG-CGGa -5'
30701 5' -58.4 NC_006552.1 + 48852 0.77 0.119835
Target:  5'- uGCGGCCGgcugACCGCCAugcAGaACCGCCg -3'
miRNA:   3'- -UGCCGGCaa--UGGUGGU---UCcUGGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.