miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30702 3' -52.3 NC_006552.1 + 21486 0.71 0.636884
Target:  5'- gGCaUUUCGUCGAAC--GCCAacgACUCCGGc -3'
miRNA:   3'- -CG-GAAGUAGCUUGucCGGU---UGAGGCC- -5'
30702 3' -52.3 NC_006552.1 + 33517 0.73 0.549507
Target:  5'- uGCCUUCGUCGGccgagaucuGCAGGCgCGccaccuGC-CCGGa -3'
miRNA:   3'- -CGGAAGUAGCU---------UGUCCG-GU------UGaGGCC- -5'
30702 3' -52.3 NC_006552.1 + 13682 0.74 0.507114
Target:  5'- cGCCUUaCAUCGAgGCAGGCCAgaucaucgACgCCGa -3'
miRNA:   3'- -CGGAA-GUAGCU-UGUCCGGU--------UGaGGCc -5'
30702 3' -52.3 NC_006552.1 + 45237 0.76 0.37211
Target:  5'- gGCCUgcgCAUCGAGCAcguccgccuuGGCCGACUCgcccuugacgCGGg -3'
miRNA:   3'- -CGGAa--GUAGCUUGU----------CCGGUUGAG----------GCC- -5'
30702 3' -52.3 NC_006552.1 + 6364 1.13 0.001534
Target:  5'- aGCCUUCAUCGAACAGGCCAACUCCGGu -3'
miRNA:   3'- -CGGAAGUAGCUUGUCCGGUUGAGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.