miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30703 3' -53.2 NC_006552.1 + 15209 0.66 0.877171
Target:  5'- aGGCcuacuacguuCGAGCCGAcgGcACGCgCAUCGCg -3'
miRNA:   3'- -CCGcu--------GCUCGGCUa-CaUGUG-GUAGUG- -5'
30703 3' -53.2 NC_006552.1 + 62048 0.66 0.877171
Target:  5'- cGGCGACgccuGAGCCGAcg-GCGauCCAUC-Ca -3'
miRNA:   3'- -CCGCUG----CUCGGCUacaUGU--GGUAGuG- -5'
30703 3' -53.2 NC_006552.1 + 31501 0.66 0.870145
Target:  5'- cGGCGACGaAGCCGGcgGgcaacgggaacucgaACGCCAcgacaUCGCc -3'
miRNA:   3'- -CCGCUGC-UCGGCUa-Ca--------------UGUGGU-----AGUG- -5'
30703 3' -53.2 NC_006552.1 + 57739 0.66 0.869352
Target:  5'- cGCGACGGacccGCCGAgGUACugCG-CAa -3'
miRNA:   3'- cCGCUGCU----CGGCUaCAUGugGUaGUg -5'
30703 3' -53.2 NC_006552.1 + 4516 0.66 0.861287
Target:  5'- ----cCGGGCCGAUGguccGCGCCAUCc- -3'
miRNA:   3'- ccgcuGCUCGGCUACa---UGUGGUAGug -5'
30703 3' -53.2 NC_006552.1 + 37324 0.66 0.843584
Target:  5'- cGGCGuCGAuguucacGCCcauGAUGcGCACCGUCGg -3'
miRNA:   3'- -CCGCuGCU-------CGG---CUACaUGUGGUAGUg -5'
30703 3' -53.2 NC_006552.1 + 38667 0.67 0.826723
Target:  5'- aGCGGCGGcGCCGggGUGucCAgCGUCAg -3'
miRNA:   3'- cCGCUGCU-CGGCuaCAU--GUgGUAGUg -5'
30703 3' -53.2 NC_006552.1 + 6213 0.67 0.825815
Target:  5'- -uCGACGAGCCGAUuccgacucuuaccGccgGCGCCGagcaUCACg -3'
miRNA:   3'- ccGCUGCUCGGCUA-------------Ca--UGUGGU----AGUG- -5'
30703 3' -53.2 NC_006552.1 + 33061 0.67 0.817549
Target:  5'- aGCGGCuuGCCGGUGcaugcGCGCCAUUccgGCa -3'
miRNA:   3'- cCGCUGcuCGGCUACa----UGUGGUAG---UG- -5'
30703 3' -53.2 NC_006552.1 + 51102 0.67 0.817549
Target:  5'- cGGcCGGcCGGGCCGcgcuucAUGUcgcgcgcauccgGCGCCGUCAUg -3'
miRNA:   3'- -CC-GCU-GCUCGGC------UACA------------UGUGGUAGUG- -5'
30703 3' -53.2 NC_006552.1 + 3688 0.68 0.788903
Target:  5'- cGCGccCGGGCCGA-GUACGgCGUCGa -3'
miRNA:   3'- cCGCu-GCUCGGCUaCAUGUgGUAGUg -5'
30703 3' -53.2 NC_006552.1 + 32487 0.68 0.787922
Target:  5'- cGGCG-CgGGGCCGGUGgaGCGCUcgaacagGUCGCg -3'
miRNA:   3'- -CCGCuG-CUCGGCUACa-UGUGG-------UAGUG- -5'
30703 3' -53.2 NC_006552.1 + 53843 0.68 0.787922
Target:  5'- cGGUGACGgcGGCCGAgGUugggaagaaguccAgGCCGUCAUu -3'
miRNA:   3'- -CCGCUGC--UCGGCUaCA-------------UgUGGUAGUG- -5'
30703 3' -53.2 NC_006552.1 + 31246 0.68 0.752623
Target:  5'- uGCGG-GGGCCGAugaucuugacggcggUGUcgauCGCCAUCACg -3'
miRNA:   3'- cCGCUgCUCGGCU---------------ACAu---GUGGUAGUG- -5'
30703 3' -53.2 NC_006552.1 + 37168 0.68 0.738056
Target:  5'- cGGCGGCGcGCCGGUcuugGU-CACCAccagcuugUCGCc -3'
miRNA:   3'- -CCGCUGCuCGGCUA----CAuGUGGU--------AGUG- -5'
30703 3' -53.2 NC_006552.1 + 5731 0.68 0.738056
Target:  5'- gGGCGGCuGAGCUGcUGgugagGCGCCAcuucggcgcucUCACc -3'
miRNA:   3'- -CCGCUG-CUCGGCuACa----UGUGGU-----------AGUG- -5'
30703 3' -53.2 NC_006552.1 + 15453 0.69 0.727522
Target:  5'- cGGCGAUGcGCCGAU---CACCGUuccCACg -3'
miRNA:   3'- -CCGCUGCuCGGCUAcauGUGGUA---GUG- -5'
30703 3' -53.2 NC_006552.1 + 36448 0.69 0.727522
Target:  5'- cGGCGGCGAaggcauGCCGAUgGUGC-CCAcuUgACg -3'
miRNA:   3'- -CCGCUGCU------CGGCUA-CAUGuGGU--AgUG- -5'
30703 3' -53.2 NC_006552.1 + 38380 0.69 0.727522
Target:  5'- cGGCGACaGGUCuAUGUuCACCGcaUCACg -3'
miRNA:   3'- -CCGCUGcUCGGcUACAuGUGGU--AGUG- -5'
30703 3' -53.2 NC_006552.1 + 32365 0.73 0.490275
Target:  5'- cGGUGaagcuuucccGCGGGCCGAUGUacuugaugggcACGCCGUUAUc -3'
miRNA:   3'- -CCGC----------UGCUCGGCUACA-----------UGUGGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.