miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30704 3' -57.8 NC_006552.1 + 51824 0.66 0.618299
Target:  5'- aGUUcaCGCAcGCGGCGUuucGAcuccGGCACGCu -3'
miRNA:   3'- -CAGcaGCGUcCGCCGCA---CU----UCGUGCG- -5'
30704 3' -57.8 NC_006552.1 + 52113 0.66 0.607624
Target:  5'- cUCGUUGCGGuaGCGGUGgaaGAAGCuguagcCGCc -3'
miRNA:   3'- cAGCAGCGUC--CGCCGCa--CUUCGu-----GCG- -5'
30704 3' -57.8 NC_006552.1 + 25428 0.66 0.607624
Target:  5'- uUCGUCcaCGGucaGCGGCGUGucGCcCGCa -3'
miRNA:   3'- cAGCAGc-GUC---CGCCGCACuuCGuGCG- -5'
30704 3' -57.8 NC_006552.1 + 32704 0.67 0.586341
Target:  5'- gGUCGaugcgCGCGuGGaCGGCaucacgGGAGCGCGCc -3'
miRNA:   3'- -CAGCa----GCGU-CC-GCCGca----CUUCGUGCG- -5'
30704 3' -57.8 NC_006552.1 + 44383 0.68 0.493169
Target:  5'- -cCGcUCGCGuccGGCGGCGUGgcGUcgaACGUa -3'
miRNA:   3'- caGC-AGCGU---CCGCCGCACuuCG---UGCG- -5'
30704 3' -57.8 NC_006552.1 + 20986 0.68 0.483208
Target:  5'- cUCGUggCGCAGGUGGCGau---CACGCa -3'
miRNA:   3'- cAGCA--GCGUCCGCCGCacuucGUGCG- -5'
30704 3' -57.8 NC_006552.1 + 30705 0.68 0.482217
Target:  5'- cUCGUCGCccucgaacuucacGGGCGGCG-GcGGCA-GCu -3'
miRNA:   3'- cAGCAGCG-------------UCCGCCGCaCuUCGUgCG- -5'
30704 3' -57.8 NC_006552.1 + 56925 0.7 0.380914
Target:  5'- --gGUCGguGGCGGCGcgGAacucgcgguacAGCGCGa -3'
miRNA:   3'- cagCAGCguCCGCCGCa-CU-----------UCGUGCg -5'
30704 3' -57.8 NC_006552.1 + 20599 0.7 0.372354
Target:  5'- -gCGcUCGUAGGCGGCaaUGAAcgccauGCGCGCg -3'
miRNA:   3'- caGC-AGCGUCCGCCGc-ACUU------CGUGCG- -5'
30704 3' -57.8 NC_006552.1 + 52284 0.72 0.300613
Target:  5'- uGUCGUCGUcGGUGGUGUucgccacaagcucGGccAGCGCGCu -3'
miRNA:   3'- -CAGCAGCGuCCGCCGCA-------------CU--UCGUGCG- -5'
30704 3' -57.8 NC_006552.1 + 5785 0.73 0.266625
Target:  5'- cGUCaggCGguGGCGGCGUGAA-CGCGg -3'
miRNA:   3'- -CAGca-GCguCCGCCGCACUUcGUGCg -5'
30704 3' -57.8 NC_006552.1 + 7748 0.73 0.266625
Target:  5'- aUCGUCGCAGacuacuuuuGCGGCG-GAGGUGgCGCc -3'
miRNA:   3'- cAGCAGCGUC---------CGCCGCaCUUCGU-GCG- -5'
30704 3' -57.8 NC_006552.1 + 32500 0.75 0.190973
Target:  5'- uGUCGUCGCcGGcCGGCGcGggGCcgguggaGCGCu -3'
miRNA:   3'- -CAGCAGCGuCC-GCCGCaCuuCG-------UGCG- -5'
30704 3' -57.8 NC_006552.1 + 50199 0.78 0.130879
Target:  5'- uGUUGUCGguGGCGGUaggcuucggcgccaGUGGcuucAGCACGCg -3'
miRNA:   3'- -CAGCAGCguCCGCCG--------------CACU----UCGUGCG- -5'
30704 3' -57.8 NC_006552.1 + 47538 0.79 0.103214
Target:  5'- aUCGaguUCGUuGGCGGCGagGAAGCGCGCg -3'
miRNA:   3'- cAGC---AGCGuCCGCCGCa-CUUCGUGCG- -5'
30704 3' -57.8 NC_006552.1 + 6739 1.12 0.000436
Target:  5'- cGUCGUCGCAGGCGGCGUGAAGCACGCa -3'
miRNA:   3'- -CAGCAGCGUCCGCCGCACUUCGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.