miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30705 3' -57.5 NC_006552.1 + 53553 0.66 0.694239
Target:  5'- uUGUcGCCGUCGCCcugCCagaggcccagcuucaUGGCUUCGCu -3'
miRNA:   3'- gGCA-UGGUAGUGGa--GG---------------ACCGGAGCGc -5'
30705 3' -57.5 NC_006552.1 + 21854 0.66 0.690053
Target:  5'- aUGUACCAcUCgACCUCCUcGGCaCUCa-- -3'
miRNA:   3'- gGCAUGGU-AG-UGGAGGA-CCG-GAGcgc -5'
30705 3' -57.5 NC_006552.1 + 26102 0.66 0.679552
Target:  5'- uUGUACCAgugguCCUCCUgcacgguccaGGCC-CGCGc -3'
miRNA:   3'- gGCAUGGUagu--GGAGGA----------CCGGaGCGC- -5'
30705 3' -57.5 NC_006552.1 + 11490 0.66 0.667953
Target:  5'- cCCGggcggaaagGCgGUCACCUCCcucagucUGGCCacuaGCGa -3'
miRNA:   3'- -GGCa--------UGgUAGUGGAGG-------ACCGGag--CGC- -5'
30705 3' -57.5 NC_006552.1 + 57287 0.68 0.542533
Target:  5'- aCGcGCCAcgcaUCugCUCggccaucuggUUGGCCUCGCGc -3'
miRNA:   3'- gGCaUGGU----AGugGAG----------GACCGGAGCGC- -5'
30705 3' -57.5 NC_006552.1 + 58731 0.68 0.532243
Target:  5'- aCCGcUGCCGauaUCACCUCCcagcaCCUUGCGa -3'
miRNA:   3'- -GGC-AUGGU---AGUGGAGGacc--GGAGCGC- -5'
30705 3' -57.5 NC_006552.1 + 13021 0.68 0.522023
Target:  5'- aUCGccGCCAUCGCCgaaggCCUGGCCaccgaggacUUGCu -3'
miRNA:   3'- -GGCa-UGGUAGUGGa----GGACCGG---------AGCGc -5'
30705 3' -57.5 NC_006552.1 + 20880 0.69 0.501821
Target:  5'- cCCccACCAgcaGCCUCCcucgcaagGGCUUCGCGg -3'
miRNA:   3'- -GGcaUGGUag-UGGAGGa-------CCGGAGCGC- -5'
30705 3' -57.5 NC_006552.1 + 62353 0.7 0.434107
Target:  5'- gCGcgGCCAUCGgucagUUUCCUGGCCUCGa- -3'
miRNA:   3'- gGCa-UGGUAGU-----GGAGGACCGGAGCgc -5'
30705 3' -57.5 NC_006552.1 + 46916 0.7 0.406747
Target:  5'- gCGcACCAgcaGCCggcaacaCCUGGCCUCGCc -3'
miRNA:   3'- gGCaUGGUag-UGGa------GGACCGGAGCGc -5'
30705 3' -57.5 NC_006552.1 + 21673 0.71 0.389119
Target:  5'- uUCGUACCGU-GCaCUCCUcGUCUCGCGc -3'
miRNA:   3'- -GGCAUGGUAgUG-GAGGAcCGGAGCGC- -5'
30705 3' -57.5 NC_006552.1 + 26275 0.71 0.380495
Target:  5'- aCCGggaUACCGUCACCUUCUucggagaaaugcGGCCggacgccagCGCGa -3'
miRNA:   3'- -GGC---AUGGUAGUGGAGGA------------CCGGa--------GCGC- -5'
30705 3' -57.5 NC_006552.1 + 6058 0.73 0.30879
Target:  5'- cCCGUgacgGCCGUUACCaccaaggaccgCCUGGCuCUCGUGa -3'
miRNA:   3'- -GGCA----UGGUAGUGGa----------GGACCG-GAGCGC- -5'
30705 3' -57.5 NC_006552.1 + 6869 1.11 0.000646
Target:  5'- uCCGUACCAUCACCUCCUGGCCUCGCGg -3'
miRNA:   3'- -GGCAUGGUAGUGGAGGACCGGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.